TSS: Rfmm 48801.1: Difference between revisions
From referenceTSS
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|gene_description= | |gene_description= | ||
|gene_id=100756 | |gene_id=100756 | ||
|gene_name= | |gene_name=ubiquitin specific peptidase 30 | ||
|gene_source=MGI:2140991 | |gene_source=MGI:2140991 | ||
|gene_symbol=Usp30 | |gene_symbol=Usp30 | ||
| Line 35: | Line 35: | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENSMUST00000031588.12 ENSMUST00000200119.3 | |transcript_name=ENSMUST00000031588.12 ENSMUST00000200119.3 BC038606 AK144578 | ||
|tss_cluster_detected=2 | |tss_cluster_detected=2 | ||
|tss_id=rfmm_48801.1 | |tss_id=rfmm_48801.1 | ||
Latest revision as of 21:17, 19 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5|EPD | |||||||||||||
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| Protocol | CAGE|TSS_database | |||||||||||||
| TSS cluster detected* | 2 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | PLS,CTCF-bound (EM10D2795363,EM10E1151881) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 6 |
|---|---|
| Nearest PromoterID: | NM_001033202.3 |
| Entrez ID: | Usp30 |
| Nearest Unigene: | XM_036164697 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | ubiquitin specific peptidase 30 |
| Gene Alias: | |
| Gene Type: | |
| CpG%: | 0.100000 |
| GC%: | 0.672131 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.