TSS: Rfmm 81327.1: Difference between revisions

Latest revision as of 06:18, 20 March 2025

Basic information about the TSS

TSS ID:	rfmm_81327.1
Species:	mouse
Chr:	chr8

Start:	95472306
End:	95472321
Strand:	+

Source datasets

FANTOM5|EPD|DRA000914

Protocol

CAGE|TSS_database|CAGE_and_CAGEscan

TSS cluster detected^*

3

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENSMUST00000156137.2:0 AK170080:0 AK155083:0 AK156627:0 AK155764:0
GeneID:	20299
HGNC/MGI_ID:	MGI:1306779
UniProt_ID:
Nearer transcript ids and distances:	BC012658:6 AF076596:11 AJ238238:16 AF163476:30 ENSMUST00000034231.4:-88 AF052505:-88 view more...

Gene_name:	chemokine (C-C motif) ligand 22
Gene_symbol:	Ccl22
Gene_synonyms:	ABCD-1 MDC Scya22
Gene_source:	MGI:1306779

TATA-Box annotation

Distance to TSS:	1
Nearest PromoterID:	NM_009137.2
Entrez ID:	Ccl22
Nearest Unigene:	NM_009137
Nearest Refseq:
Nearest Ensembl:
Gene Name:	chemokine (C-C motif) ligand 22
Gene Alias:
Gene Type:
CpG%:	0.000000
GC%:	0.500000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 16: / Line 16: @@
 |gene_description=
 |gene_id=20299
-|gene_name=Ccl22
+|gene_name=chemokine (C-C motif) ligand 22
 |gene_source=MGI:1306779
 |gene_symbol=Ccl22
@@ Line 35: / Line 35: @@
 |strand=+
 |tata_box=
-|transcript_name=ENSMUST00000156137.2 NM_009137.2 AK170080 AK155083 AK156627 AK155764
+|transcript_name=ENSMUST00000156137.2 AK170080 AK155083 AK156627 AK155764
 |tss_cluster_detected=3
 |tss_id=rfmm_81327.1