TSS: Mm 82607.1: Difference between revisions

Revision as of 21:42, 13 May 2019

Basic information about the TSS

TSS cluster detected^*

* The number of TSS cluster called studies (maximum 5)

Gene and protein annotation

Transcript_name:	ENSMUST00000034698.7 NM_010744 uc009olp.1 uc012gpg.1 uc009olq.1 AK166092 AK133513 BC016568 AK160525
Distance:	0
GeneID:	17083
HGNC/MGI_ID:	MGI:106201
UniProt_ID:	B2RRM5 Q05DM6 Q3V009

Gene_name:	transmembrane emp24 domain containing 1
Gene_symbol:	Tmed1
Gene_synonyms:	Il1rl1l Ly84l St2l
Gene_source:	MGI:106201

TATA-Box annotation

Distance to TSS:	42
Nearest PromoterID:	NR_136912
Entrez ID:	17083
Nearest Unigene:	Mm.196618
Nearest Refseq:	NM_010744
Nearest Ensembl:	ENSMUSG00000032180
Gene Name:	transmembrane emp24 domain containing 1
Gene Alias:	Il1rl1l
Gene Description:	transmembrane p24 trafficking protein 1
Gene Type:	protein-coding
CpG%:	0.075
GC%:	0.631841
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):	"-26(ATCCTTAAAGGG,-,0.00),-24(CCTTAAAGGGTC,+,0.00)"

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetail
+|Ly84l=
+|St2l=
 |all_trans=ENSMUST00000034698.7:0 NM_010744:0 uc009olp.1:0 uc012gpg.1:0 uc009olq.1:0 AK166092:0 AK133513:0 BC016568:0 AK160525:0 BC006715:4 U41805:20 BC138499:-29 BC138498:-31 BC145298:-31
 |chr=chr9
@@ Line 6: / Line 8: @@
 |distance_to_tss=42
 |end=21510203
+|end_of_center_position=21510193
 |entrez_id=17083
 |gc_percent=0.631841
-|gene_alias=Il1rl1l|Ly84l|St2l
+|gene_alias=Il1rl1l
 |gene_description=transmembrane p24 trafficking protein 1
 |gene_id=17083
@@ Line 24: / Line 27: @@
 |species=mouse
 |start=21510181
+|start_of_center_position=21510192
 |strand=-
 |tata_box="-26(ATCCTTAAAGGG,-,0.00),-24(CCTTAAAGGGTC,+,0.00)"