TSS: Hg 100142.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.065 |distance_to_tss=540 |entrez_id=158297 |gc_percent=0.562189 |gene_alias=C9orf138|FAM154A |gene_description=stabilizer of axonemal microtubules 1...") |
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{{TSSDetail | {{TSSDetail | ||
|FAM154A= | |||
|all_trans=KJ900327:-188 BC033489:-466 ENST00000380534.8:-468 uc003zni.4:-468 ENST00000583128.2:-489 uc064shd.1:-489 AK292245:-489 | |||
|chr=chr9 | |||
|cpg_percent=0.065 | |cpg_percent=0.065 | ||
|distance=-188 | |||
|distance_to_tss=540 | |distance_to_tss=540 | ||
|end=19032720 | |||
|entrez_id=158297 | |entrez_id=158297 | ||
|gc_percent=0.562189 | |gc_percent=0.562189 | ||
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|nearest_refseq=NM_153707 | |nearest_refseq=NM_153707 | ||
|nearest_unigene=Hs.731593 | |nearest_unigene=Hs.731593 | ||
|num_trans=7 | |||
|species=human | |||
|start=19032716 | |||
|strand=- | |||
|transcript_name=KJ900327 | |||
|tss_classification=yes | |||
|tss_id=hg_100142.1 | |tss_id=hg_100142.1 | ||
|tss_score=1 | |||
}} | }} | ||
Revision as of 17:02, 8 March 2018
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 540 |
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| Nearest PromoterID: | NM_153707 |
| Entrez ID: | 158297 |
| Nearest Unigene: | Hs.731593 |
| Nearest Refseq: | NM_153707 |
| Nearest Ensembl: | ENSG00000155875 |
| Gene Name: | SAXO1 |
| Gene Alias: | C9orf138 |
| Gene Description: | stabilizer of axonemal microtubules 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.065 |
| GC%: | 0.562189 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |