TSS: Mm 95525.1: Difference between revisions

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(Created page with "{{TSSDetail |all_trans=ENSMUST00000093121.12:0 ENSMUST00000166537.7:0 AK012498:0 AK160198:0 AK027909:0 AK014245:0 AK088339:0 AK158209:0 AK166673:0 AK152609:0 AK010628:3 AK0029...")
 
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{{TSSDetail
{{TSSDetail
|2610043E24Rik=
|2610206H23Rik=
|EMC19=
|OCP-II=
|OCP2=
|SKP1=
|Tceb1l=
|all_trans=ENSMUST00000093121.12:0 ENSMUST00000166537.7:0 AK012498:0 AK160198:0 AK027909:0 AK014245:0 AK088339:0 AK158209:0 AK166673:0 AK152609:0 AK010628:3 AK002983:-4 Z47088:6 BC002115:11 ENSMUST00000037324.11:-20 AK078330:-20 AF083214:30 ENSMUST00000147684.7:-34 NM_011543:-34 uc007ivf.2:-34 ENSMUST00000109072.1:148
|all_trans=ENSMUST00000093121.12:0 ENSMUST00000166537.7:0 AK012498:0 AK160198:0 AK027909:0 AK014245:0 AK088339:0 AK158209:0 AK166673:0 AK152609:0 AK010628:3 AK002983:-4 Z47088:6 BC002115:11 ENSMUST00000037324.11:-20 AK078330:-20 AF083214:30 ENSMUST00000147684.7:-34 NM_011543:-34 uc007ivf.2:-34 ENSMUST00000109072.1:148
|chr=chr11
|chr=chr11
Line 6: Line 13:
|distance_to_tss=40
|distance_to_tss=40
|end=52232041
|end=52232041
|end_of_center_position=52232035
|entrez_id=21402
|entrez_id=21402
|gc_percent=0.671642
|gc_percent=0.671642
|gene_alias=15kDa|2610043E24Rik|2610206H23Rik|EMC19|OCP-II|OCP2|SKP1|Tceb1l|p19A|p19Skp1
|gene_alias=15kDa
|gene_description=S-phase kinase-associated protein 1A
|gene_description=S-phase kinase-associated protein 1A
|gene_id=21402
|gene_id=21402
Line 22: Line 30:
|nearest_unigene=Mm.42944
|nearest_unigene=Mm.42944
|num_trans=21
|num_trans=21
|p19A=
|p19Skp1=
|species=mouse
|species=mouse
|start=52232028
|start=52232028
|start_of_center_position=52232034
|strand=+
|strand=+
|tata_box="-31(TGCTATAAAAGG,-,0.00)"
|tata_box="-31(TGCTATAAAAGG,-,0.00)"

Revision as of 00:32, 12 May 2019

Basic information about the TSS

TSS ID:mm_95525.1
Species:mouse
Chr:chr11
Start:52232028
End:52232041
Strand:+
TSS cluster detected*

  * The number of TSS cluster called studies (maximum 5)



Gene and protein annotation

Transcript_name:ENSMUST00000093121.12 ENSMUST00000166537.7 AK012498 AK160198 AK027909 AK014245 AK088339 AK158209 AK166673 AK152609
Distance:0
GeneID:21402
HGNC/MGI_ID:MGI:103575
UniProt_ID:E9PUV4 Q3TL58
Gene_name:S-phase kinase-associated protein 1A
Gene_symbol:Skp1a
Gene_synonyms:2610043E24Rik 2610206H23Rik Tceb1l p19Skp1
Gene_source:MGI:103575



TATA-Box annotation

Distance to TSS:40
Nearest PromoterID:NM_011543
Entrez ID:21402
Nearest Unigene:Mm.42944
Nearest Refseq:NM_011543
Nearest Ensembl:ENSMUSG00000036309
Gene Name:S-phase kinase-associated protein 1A
Gene Alias:15kDa
Gene Description:S-phase kinase-associated protein 1A
Gene Type:protein-coding
CpG%:0.135
GC%:0.671642
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):"-31(TGCTATAAAAGG,-,0.00)"



TSS expression

Expression data not found.

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