TSS: Hg 100225.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0 |distance_to_tss=6786 |entrez_id=407035 |gc_percent=0.368159 |gene_alias=MIRN31|hsa-mir-31|miR-31 |gene_description=microRNA 31 |gene_name=MIR31 |ge...") |
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{{TSSDetail | {{TSSDetail | ||
|chr=chr9 | |||
|cpg_percent=0 | |cpg_percent=0 | ||
|distance= | |||
|distance_to_tss=6786 | |distance_to_tss=6786 | ||
|end=21505412 | |||
|entrez_id=407035 | |entrez_id=407035 | ||
|gc_percent=0.368159 | |gc_percent=0.368159 | ||
| Line 8: | Line 11: | ||
|gene_name=MIR31 | |gene_name=MIR31 | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
|hsa-mir-31= | |||
|miR-31= | |||
|nearest_ensembl=ENSG00000199177 | |nearest_ensembl=ENSG00000199177 | ||
|nearest_promoter_id=NR_029505 | |nearest_promoter_id=NR_029505 | ||
|nearest_refseq=NR_029505 | |nearest_refseq=NR_029505 | ||
|nearest_unigene= | |nearest_unigene= | ||
|num_trans=0 | |||
|species=human | |||
|start=21505385 | |||
|strand=- | |||
|tata_box="-79(TCCTCTTAAAGC,-,0.00),-78(CCTCTTAAAGCA,+,0.00)" | |tata_box="-79(TCCTCTTAAAGC,-,0.00),-78(CCTCTTAAAGCA,+,0.00)" | ||
|transcript_name= | |||
|tss_classification=no | |||
|tss_id=hg_100225.1 | |tss_id=hg_100225.1 | ||
|tss_score=1 | |||
}} | }} | ||
Revision as of 17:04, 8 March 2018
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 6786 |
|---|---|
| Nearest PromoterID: | NR_029505 |
| Entrez ID: | 407035 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_029505 |
| Nearest Ensembl: | ENSG00000199177 |
| Gene Name: | MIR31 |
| Gene Alias: | MIRN31 |
| Gene Description: | microRNA 31 |
| Gene Type: | ncRNA |
| CpG%: | 0 |
| GC%: | 0.368159 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-79(TCCTCTTAAAGC,-,0.00),-78(CCTCTTAAAGCA,+,0.00)" |