TSS: Hg 100249.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.12 |distance_to_tss=3803 |entrez_id=1029 |gc_percent=0.731343 |gene_alias=ARF|CDK4I|CDKN2|CMM2|INK4|INK4A|MLM|MTS-1|MTS1|P14|P14ARF|P16|P16-INK4A|P1...") |
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{{TSSDetail | {{TSSDetail | ||
|CDK4I= | |||
|CDKN2= | |||
|CMM2= | |||
|INK4= | |||
|INK4A= | |||
|MLM= | |||
|MTS-1= | |||
|MTS1= | |||
|P14= | |||
|P14ARF= | |||
|P16= | |||
|P16-INK4A= | |||
|P16INK4= | |||
|P16INK4A= | |||
|P19= | |||
|P19ARF= | |||
|TP16= | |||
|all_trans=KJ901333:-177 ENST00000578845.2:-301 ENST00000380150.2:-301 uc064skc.1:-301 uc064ski.1:-301 ENST00000479692.2:-315 uc064skg.1:-315 ENST00000497750.1:-369 uc064skj.1:-369 | |||
|chr=chr9 | |||
|cpg_percent=0.12 | |cpg_percent=0.12 | ||
|distance=-177 | |||
|distance_to_tss=3803 | |distance_to_tss=3803 | ||
|end=21971031 | |||
|entrez_id=1029 | |entrez_id=1029 | ||
|gc_percent=0.731343 | |gc_percent=0.731343 | ||
| Line 12: | Line 33: | ||
|nearest_refseq=NM_000077 | |nearest_refseq=NM_000077 | ||
|nearest_unigene=Hs.512599 | |nearest_unigene=Hs.512599 | ||
|num_trans=9 | |||
|species=human | |||
|start=21971017 | |||
|strand=- | |||
|transcript_name=KJ901333 | |||
|tss_classification=yes | |||
|tss_id=hg_100249.1 | |tss_id=hg_100249.1 | ||
|tss_score=1 | |||
}} | }} | ||
Revision as of 17:04, 8 March 2018
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 3803 |
|---|---|
| Nearest PromoterID: | NM_058197 |
| Entrez ID: | 1029 |
| Nearest Unigene: | Hs.512599 |
| Nearest Refseq: | NM_000077 |
| Nearest Ensembl: | ENSG00000147889 |
| Gene Name: | CDKN2A |
| Gene Alias: | ARF |
| Gene Description: | cyclin dependent kinase inhibitor 2A |
| Gene Type: | protein-coding |
| CpG%: | 0.12 |
| GC%: | 0.731343 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |