TSS: Hg 100274.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.02 |distance_to_tss=-207554 |entrez_id=1030 |gc_percent=0.552239 |gene_alias=CDK4I|INK4B|MTS2|P15|TP15|p15INK4b |gene_description=cyclin dependent k...") |
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{{TSSDetail | {{TSSDetail | ||
|INK4B= | |||
|MTS2= | |||
|P15= | |||
|TP15= | |||
|chr=chr9 | |||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
|distance= | |||
|distance_to_tss=-207554 | |distance_to_tss=-207554 | ||
|end=22216870 | |||
|entrez_id=1030 | |entrez_id=1030 | ||
|gc_percent=0.552239 | |gc_percent=0.552239 | ||
| Line 12: | Line 19: | ||
|nearest_refseq=NM_004936 | |nearest_refseq=NM_004936 | ||
|nearest_unigene=Hs.72901 | |nearest_unigene=Hs.72901 | ||
|num_trans=0 | |||
|p15INK4b= | |||
|species=human | |||
|start=22216864 | |||
|strand=- | |||
|tata_box="-34(TGGTTTAAATGC,-,0.00)" | |tata_box="-34(TGGTTTAAATGC,-,0.00)" | ||
|transcript_name= | |||
|tss_classification=no | |||
|tss_id=hg_100274.1 | |tss_id=hg_100274.1 | ||
|tss_score=1 | |||
}} | }} | ||
Revision as of 17:05, 8 March 2018
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -207554 |
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| Nearest PromoterID: | NM_078487 |
| Entrez ID: | 1030 |
| Nearest Unigene: | Hs.72901 |
| Nearest Refseq: | NM_004936 |
| Nearest Ensembl: | ENSG00000147883 |
| Gene Name: | CDKN2B |
| Gene Alias: | CDK4I |
| Gene Description: | cyclin dependent kinase inhibitor 2B |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.552239 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-34(TGGTTTAAATGC,-,0.00)" |