TSS: Hg 92414.1: Difference between revisions
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{{TSSDetail | {{TSSDetail | ||
|NIX= | |NIX= | ||
|all_trans=ENST00000519902.1:15 BC034827:15 BC051742:21 | |all_trans=ENST00000519902.1:15 NR_144550:15 BC034827:15 BC051742:21 ENST00000650042.1:27 | ||
|chr=chr8 | |chr=chr8 | ||
|cpg_percent=0.12 | |cpg_percent=0.12 | ||
|distance=15 | |distance=15 | ||
|distance_to_tss=- | |distance_to_tss=-36 | ||
|end=26383010 | |end=26383010 | ||
|end_of_center_position=26382989 | |end_of_center_position=26382989 | ||
|entrez_id= | |entrez_id=157489 | ||
|gc_percent=0.721393 | |gc_percent=0.721393 | ||
|gene_alias= | |gene_alias=- | ||
|gene_description= | |gene_description=SDA1 domain containing 1 pseudogene 1 | ||
|gene_id=157489 | |gene_id=157489 | ||
|gene_name=SDA1 domain containing 1 pseudogene 1 | |gene_name=SDA1 domain containing 1 pseudogene 1 | ||
| Line 17: | Line 17: | ||
|gene_symbol=SDAD1P1 | |gene_symbol=SDAD1P1 | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=pseudo | ||
|hgnc_mgi_id=HGNC:31403 | |hgnc_mgi_id=HGNC:31403 | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000228451 | ||
|nearest_promoter_id= | |nearest_promoter_id=NR_144550 | ||
|nearest_refseq= | |nearest_refseq=NR_144550 | ||
|nearest_unigene=Hs. | |nearest_unigene=Hs.586388 | ||
|num_trans= | |num_trans=5 | ||
|species=human | |species=human | ||
|start=26382967 | |start=26382967 | ||
|start_of_center_position=26382988 | |start_of_center_position=26382988 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box=-57(CCTTTTCTGCGC,+,0.00) | ||
|transcript_name=ENST00000519902.1 BC034827 | |transcript_name=ENST00000519902.1 NR_144550 BC034827 | ||
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_92414.1 | |tss_id=hg_92414.1 | ||
Revision as of 19:20, 18 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -36 |
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| Nearest PromoterID: | NR_144550 |
| Entrez ID: | 157489 |
| Nearest Unigene: | Hs.586388 |
| Nearest Refseq: | NR_144550 |
| Nearest Ensembl: | ENSG00000228451 |
| Gene Name: | SDA1 domain containing 1 pseudogene 1 |
| Gene Alias: | - |
| Gene Description: | SDA1 domain containing 1 pseudogene 1 |
| Gene Type: | pseudo |
| CpG%: | 0.12 |
| GC%: | 0.721393 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -57(CCTTTTCTGCGC,+,0.00) |
TSS expression
Expression data not found.