TSS: Hg 1004.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.01 |distance_to_tss=14694 |entrez_id=55160 |gc_percent=0.383085 |gene_alias=GrinchGEF |gene_description=Rho guanine nucleotide exchange factor 10 li...") |
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{{TSSDetail | {{TSSDetail | ||
|chr=chr1 | |||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
|distance= | |||
|distance_to_tss=14694 | |distance_to_tss=14694 | ||
|end=17595248 | |||
|entrez_id=55160 | |entrez_id=55160 | ||
|gc_percent=0.383085 | |gc_percent=0.383085 | ||
| Line 12: | Line 15: | ||
|nearest_refseq=NM_018125 | |nearest_refseq=NM_018125 | ||
|nearest_unigene=Hs.443460 | |nearest_unigene=Hs.443460 | ||
|num_trans=0 | |||
|species=human | |||
|start=17595245 | |||
|strand=+ | |||
|tata_box="-74(GTTTTTATAGAA,+,0.00),-7(TTTTTTAAAGCT,+,0.00)" | |tata_box="-74(GTTTTTATAGAA,+,0.00),-7(TTTTTTAAAGCT,+,0.00)" | ||
|transcript_name= | |||
|tss_classification=no | |||
|tss_id=hg_1004.1 | |tss_id=hg_1004.1 | ||
|tss_score=1 | |||
}} | }} | ||
Revision as of 17:08, 8 March 2018
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 14694 |
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| Nearest PromoterID: | NM_001011722 |
| Entrez ID: | 55160 |
| Nearest Unigene: | Hs.443460 |
| Nearest Refseq: | NM_018125 |
| Nearest Ensembl: | ENSG00000074964 |
| Gene Name: | ARHGEF10L |
| Gene Alias: | GrinchGEF |
| Gene Description: | Rho guanine nucleotide exchange factor 10 like |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.383085 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-74(GTTTTTATAGAA,+,0.00),-7(TTTTTTAAAGCT,+,0.00)" |