TSS: Hg 234953.1: Difference between revisions
From referenceTSS
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{{ | {{TSSDetail | ||
|all_trans= | |all_trans= | ||
|chr=chr1 | |||
|chr= | |cpg_percent=0.015 | ||
|cpg_percent= | |||
|distance= | |distance= | ||
|distance_to_tss= | |distance_to_tss=-449 | ||
|end= | |end=36538 | ||
|entrez_id= | |entrez_id=645520 | ||
|gc_percent= | |gc_percent=0.517413 | ||
|gene_alias= | |gene_alias=F379|FAM138F | ||
|gene_description= | |gene_description=family with sequence similarity 138 member A | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name=FAM138A | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=ncRNA | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000237613 | ||
|nearest_promoter_id= | |nearest_promoter_id=NR_026818 | ||
|nearest_refseq= | |nearest_refseq=NR_026818 | ||
|nearest_unigene= | |nearest_unigene=Hs.569137 | ||
|num_trans= | |num_trans=0 | ||
|peakPage= | |||
|peak_id=hg_234953.1 | |peak_id=hg_234953.1 | ||
|peak_score= | |peak_score= | ||
|start= | |species=human | ||
|strand= | |start=36521 | ||
|strand=+ | |||
|tata_box= | |tata_box= | ||
|transcript_name= | |transcript_name= | ||
|tss_classification=no | |||
|tss_id=hg_234953.1 | |||
|tss_score=1 | |||
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Revision as of 00:51, 13 March 2018
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -449 |
|---|---|
| Nearest PromoterID: | NR_026818 |
| Entrez ID: | 645520 |
| Nearest Unigene: | Hs.569137 |
| Nearest Refseq: | NR_026818 |
| Nearest Ensembl: | ENSG00000237613 |
| Gene Name: | FAM138A |
| Gene Alias: | F379 |
| Gene Description: | family with sequence similarity 138 member A |
| Gene Type: | ncRNA |
| CpG%: | 0.015 |
| GC%: | 0.517413 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |