TSS: Hg 100854.1: Difference between revisions
From referenceTSS
No edit summary |
No edit summary |
||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|BTEB1= | |BTEB1= | ||
|all_trans=LF345226:77 MA580803:77 LF345227:313 MA580804:313 | |||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.05 | |cpg_percent=0.05 | ||
|distance= | |distance=77 | ||
|distance_to_tss=565 | |distance_to_tss=565 | ||
|end=70414100 | |end=70414100 | ||
| Line 9: | Line 10: | ||
|entrez_id=687 | |entrez_id=687 | ||
|gc_percent=0.572139 | |gc_percent=0.572139 | ||
|gene_alias=BTEB | |gene_alias=BTEB|BTEB1 | ||
|gene_description=Kruppel like factor 9 | |gene_description=Kruppel like factor 9 | ||
|gene_name=KLF9 | |gene_name=KLF9 | ||
| Line 17: | Line 18: | ||
|nearest_refseq=NM_001206 | |nearest_refseq=NM_001206 | ||
|nearest_unigene=Hs.150557 | |nearest_unigene=Hs.150557 | ||
|num_trans= | |num_trans=4 | ||
|species=human | |species=human | ||
|start=70414083 | |start=70414083 | ||
|start_of_center_position=70414091 | |start_of_center_position=70414091 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box=-77(CCTTTTAAATGT,+,0.00) | ||
|transcript_name= | |transcript_name=LF345226 MA580803 | ||
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_100854.1 | |tss_id=hg_100854.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Revision as of 15:29, 15 June 2021
Basic information about the TSS
|
| |||||||||||||
| TSS cluster detected* |
|---|
* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | 565 |
|---|---|
| Nearest PromoterID: | NM_001206 |
| Entrez ID: | 687 |
| Nearest Unigene: | Hs.150557 |
| Nearest Refseq: | NM_001206 |
| Nearest Ensembl: | ENSG00000119138 |
| Gene Name: | KLF9 |
| Gene Alias: | BTEB |
| Gene Description: | Kruppel like factor 9 |
| Gene Type: | protein-coding |
| CpG%: | 0.05 |
| GC%: | 0.572139 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -77(CCTTTTAAATGT,+,0.00) |