TSS: Mm 170516.1: Difference between revisions
From referenceTSS
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{{ | {{TSSDetail | ||
|Btdc= | |||
|F730015O22Rik= | |||
|PD-L2= | |||
|all_trans= | |all_trans= | ||
|chr=chr19 | |chr=chr19 | ||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
|distance= | |distance= | ||
|distance_to_tss=53840 | |distance_to_tss=53840 | ||
|end= | |end=29464762 | ||
|entrez_id=58205 | |entrez_id=58205 | ||
|gc_percent=0.522388 | |gc_percent=0.522388 | ||
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|gene_description=programmed cell death 1 ligand 2 | |gene_description=programmed cell death 1 ligand 2 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name=Pdcd1lg2 | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
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|nearest_refseq=NM_021396 | |nearest_refseq=NM_021396 | ||
|nearest_unigene=Mm.116737 | |nearest_unigene=Mm.116737 | ||
|num_trans= | |num_trans=0 | ||
|peakPage= | |||
|peak_id=mm_170516.1 | |peak_id=mm_170516.1 | ||
|peak_score=1 | |peak_score=1 | ||
|start= | |species=mouse | ||
|strand= | |start=29464756 | ||
|strand=- | |||
|tata_box="-38(CCCCTTATAAGC,-,0.00),-36(CCTTATAAGCAC,+,0.00)" | |tata_box="-38(CCCCTTATAAGC,-,0.00),-36(CCTTATAAGCAC,+,0.00)" | ||
|transcript_name= | |transcript_name= | ||
|tss_classification=no | |||
|tss_id=mm_170516.1 | |||
|tss_score=1 | |||
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Revision as of 04:02, 18 March 2018
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 5)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 53840 |
|---|---|
| Nearest PromoterID: | NM_021396 |
| Entrez ID: | 58205 |
| Nearest Unigene: | Mm.116737 |
| Nearest Refseq: | NM_021396 |
| Nearest Ensembl: | ENSMUSG00000016498 |
| Gene Name: | Pdcd1lg2 |
| Gene Alias: | B7-DC |
| Gene Description: | programmed cell death 1 ligand 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.025 |
| GC%: | 0.522388 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-38(CCCCTTATAAGC,-,0.00),-36(CCTTATAAGCAC,+,0.00)" |