TSS: Hg 101369.1: Difference between revisions
From referenceTSS
No edit summary |
No edit summary |
||
| Line 2: | Line 2: | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
|distance= | |distance=NA | ||
|distance_to_tss=73906 | |distance_to_tss=73906 | ||
|end=91192974 | |end=91192974 | ||
| Line 21: | Line 21: | ||
|start_of_center_position=91192967 | |start_of_center_position=91192967 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box=-33(CTTTTTATAGCG,+,0.00),45(CTTTTTATAAGA,+,0.00) | ||
|transcript_name= | |transcript_name= | ||
|tss_classification=yes | |tss_classification=yes | ||
Latest revision as of 16:38, 15 June 2021
Basic information about the TSS
|
| |||||||||||||
| TSS cluster detected* |
|---|
* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | 73906 |
|---|---|
| Nearest PromoterID: | NR_135306 |
| Entrez ID: | 100129347 |
| Nearest Unigene: | Hs.522287 |
| Nearest Refseq: | NR_135306 |
| Nearest Ensembl: | ENSG00000229694 |
| Gene Name: | LINC00484 |
| Gene Alias: | C9orf73 |
| Gene Description: | long intergenic non-protein coding RNA 484 |
| Gene Type: | ncRNA |
| CpG%: | 0.015 |
| GC%: | 0.41791 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -33(CTTTTTATAGCG,+,0.00),45(CTTTTTATAAGA,+,0.00) |