TSS: Hg 101624.1: Difference between revisions
From referenceTSS
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|ETMOD= | |ETMOD= | ||
|TMOD= | |TMOD= | ||
|all_trans=ENST00000451595.7 | |all_trans=ENST00000451595.7:-226 | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
|distance=-226 | |distance=-226 | ||
|distance_to_tss= | |distance_to_tss=14807 | ||
|end=97516480 | |end=97516480 | ||
|end_of_center_position=97516473 | |end_of_center_position=97516473 | ||
|entrez_id=7111 | |entrez_id=7111 | ||
|gc_percent=0.527363 | |gc_percent=0.527363 | ||
|gene_alias=D9S57E | |gene_alias=D9S57E{{!}}ETMOD{{!}}TMOD | ||
|gene_description=tropomodulin 1 | |gene_description=tropomodulin 1 | ||
|gene_name=TMOD1 | |gene_name=TMOD1 | ||
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|nearest_refseq=NM_003275 | |nearest_refseq=NM_003275 | ||
|nearest_unigene=Hs.404289 | |nearest_unigene=Hs.404289 | ||
|num_trans= | |num_trans=1 | ||
|species=human | |species=human | ||
|start=97516465 | |start=97516465 | ||
|start_of_center_position=97516472 | |start_of_center_position=97516472 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box=32(GTCTTTAAAGCG,+,0.00),33(TCTTTAAAGCGC,+,0.00) | ||
|transcript_name=ENST00000451595.7 | |transcript_name=ENST00000451595.7 | ||
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_101624.1 | |tss_id=hg_101624.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} |
Latest revision as of 16:44, 15 June 2021
Basic information about the TSS
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TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
Distance to TSS: | 14807 |
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Nearest PromoterID: | NM_003275 |
Entrez ID: | 7111 |
Nearest Unigene: | Hs.404289 |
Nearest Refseq: | NM_003275 |
Nearest Ensembl: | ENSG00000136842 |
Gene Name: | TMOD1 |
Gene Alias: | D9S57E|ETMOD|TMOD |
Gene Description: | tropomodulin 1 |
Gene Type: | protein-coding |
CpG%: | 0.01 |
GC%: | 0.527363 |
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 32(GTCTTTAAAGCG,+,0.00),33(TCTTTAAAGCGC,+,0.00) |