TSS: Hg 101780.1: Difference between revisions
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{{TSSDetail | {{TSSDetail | ||
|all_trans=ENST00000664068.1:-42 | |||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0 | |cpg_percent=0 | ||
|distance= | |distance=-42 | ||
|distance_to_tss=659 | |distance_to_tss=659 | ||
|end=104091823 | |end=104091823 | ||
Line 10: | Line 11: | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=SMC2 antisense RNA 1 (head to head) | |gene_description=SMC2 antisense RNA 1 (head to head) | ||
|gene_name=SMC2- | |gene_id=101928550 | ||
|gene_name=SMC2 divergent transcript | |||
|gene_source=HGNC:50827 | |||
|gene_symbol=SMC2-DT | |||
|gene_synonyms= | |||
|gene_type=ncRNA | |gene_type=ncRNA | ||
|hgnc_mgi_id=HGNC:50827 | |||
|nearest_ensembl=ENSG00000270332 | |nearest_ensembl=ENSG00000270332 | ||
|nearest_promoter_id=NR_121580 | |nearest_promoter_id=NR_121580 | ||
|nearest_refseq=NR_121580 | |nearest_refseq=NR_121580 | ||
|nearest_unigene=Hs.144722 | |nearest_unigene=Hs.144722 | ||
|num_trans= | |num_trans=1 | ||
|species=human | |species=human | ||
|start=104091807 | |start=104091807 | ||
|start_of_center_position=104091815 | |start_of_center_position=104091815 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box=-73(GTCCTTATATGG,-,0.00),-71(CCTTATATGGAA,+,0.00) | ||
|transcript_name= | |transcript_name=ENST00000664068.1 | ||
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_101780.1 | |tss_id=hg_101780.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |||
}} | }} |
Revision as of 16:48, 15 June 2021
Basic information about the TSS
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TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
Distance to TSS: | 659 |
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Nearest PromoterID: | NR_121580 |
Entrez ID: | 101928550 |
Nearest Unigene: | Hs.144722 |
Nearest Refseq: | NR_121580 |
Nearest Ensembl: | ENSG00000270332 |
Gene Name: | SMC2 divergent transcript |
Gene Alias: | - |
Gene Description: | SMC2 antisense RNA 1 (head to head) |
Gene Type: | ncRNA |
CpG%: | 0 |
GC%: | 0.457711 |
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -73(GTCCTTATATGG,-,0.00),-71(CCTTATATGGAA,+,0.00) |
TSS expression
Expression data not found.