TSS: Hg 102031.1: Difference between revisions
From referenceTSS
No edit summary |
No edit summary |
||
| Line 2: | Line 2: | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0 | |cpg_percent=0 | ||
|distance= | |distance=NA | ||
|distance_to_tss= | |distance_to_tss=30861 | ||
|end=111728682 | |end=111728682 | ||
|end_of_center_position=111728676 | |end_of_center_position=111728676 | ||
|entrez_id=158401 | |entrez_id=158401 | ||
|gc_percent=0.373134 | |gc_percent=0.373134 | ||
|gene_alias= | |gene_alias=C9orf84{{!}}ZIP2{{!}}ZIP2H | ||
|gene_description= | |gene_description=shortage in chiasmata 1 | ||
|gene_name= | |gene_name=SHOC1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000165181 | |nearest_ensembl=ENSG00000165181 | ||
| Line 21: | Line 21: | ||
|start_of_center_position=111728675 | |start_of_center_position=111728675 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box=45(CCTTTTCTGGAC,+,0.00) | ||
|transcript_name= | |transcript_name= | ||
|tss_classification=no | |tss_classification=no | ||
Latest revision as of 16:54, 15 June 2021
Basic information about the TSS
|
| |||||||||||||
| TSS cluster detected* |
|---|
* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | 30861 |
|---|---|
| Nearest PromoterID: | NM_001080551 |
| Entrez ID: | 158401 |
| Nearest Unigene: | Hs.428209 |
| Nearest Refseq: | NM_173521 |
| Nearest Ensembl: | ENSG00000165181 |
| Gene Name: | SHOC1 |
| Gene Alias: | C9orf84|ZIP2|ZIP2H |
| Gene Description: | shortage in chiasmata 1 |
| Gene Type: | protein-coding |
| CpG%: | 0 |
| GC%: | 0.373134 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 45(CCTTTTCTGGAC,+,0.00) |