TSS: Hg 102074.1: Difference between revisions

Revision as of 16:54, 15 June 2021

Basic information about the TSS

TSS ID:	hg_102074.1
Species:	human
Chr:	chr9

Start:	112718023
End:	112718145
Strand:	-

TSS cluster detected^*

* The number of TSS cluster called studies (maximum 16)

Gene and protein annotation

Transcript_name:	ENST00000374242.9 ENST00000497712.6 ENST00000481146.6 ENST00000374234.1 ENST00000476599.2 NM_021218 NM_001329589 NR_138056 NM_001329590 NM_001329588 NM_001329587 NM_001329586 NM_001329585 NR_138054 NR_138055 BC014881 LF383873 MA619450 AK000637 BC065210 AF161409 AF161411 AK310007
Distance:	0
GeneID:	58493
HGNC/MGI_ID:	HGNC:24994
UniProt_ID:	Q5VWJ6 Q9NRY2 X6R8P6

Gene_name:	INTS3 and NABP interacting protein
Gene_symbol:	INIP
Gene_synonyms:	HSPC043 MISE SOSS-C hSSBIP1
Gene_source:	HGNC:24994

TATA-Box annotation

Distance to TSS:	33
Nearest PromoterID:	NR_138056
Entrez ID:	58493
Nearest Unigene:	Hs.658575
Nearest Refseq:	NM_021218
Nearest Ensembl:	ENSG00000148153
Gene Name:	INTS3 and NABP interacting protein
Gene Alias:	C9orf80\|HSPC043\|MISE\|SOSSC\|SSBIP1\|hSSBIP1
Gene Description:	INTS3 and NABP interacting protein
Gene Type:	protein-coding
CpG%:	0.11
GC%:	0.686567
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):	43(CCCTTTAAGAGC,+,0.00),43(CCCTTTAAGAGC,-,0.00),44(CCTTTAAGAGCA,+,0.00)

TSS expression

Expression data not found.

@@ Line 4: / Line 4: @@
 |SOSSC=
 |SSBIP1=
-|all_trans=ENST00000497712.6:0 ENST00000481146.6:0 ENST00000374234.1:0 ENST00000476599.2:0 NM_021218:0 uc064vcp.1:0 uc064vcr.1:0 uc064vcs.1:0 uc064vct.1:0 BC014881:0 AK000637:0 BC065210:0 AF161409:0 AF161411:0 AK310007:0 ENST00000374236.5:-4 uc064vcq.1:-4 ENST00000374242.8:-91 uc004bgg.4:-91
+|all_trans=ENST00000374242.9:0 ENST00000497712.6:0 ENST00000481146.6:0 ENST00000374234.1:0 ENST00000476599.2:0 NM_021218:0 NM_001329589:0 NR_138056:0 NM_001329590:0 NM_001329588:0 NM_001329587:0 NM_001329586:0 NM_001329585:0 NR_138054:0 NR_138055:0 BC014881:0 LF383873:0 MA619450:0 AK000637:0 BC065210:0 AF161409:0 AF161411:0 AK310007:0 ENST00000374236.5:-4
 |chr=chr9
 |cpg_percent=0.11
 |distance=0
-|distance_to_tss=65
+|distance_to_tss=33
 |end=112718145
 |end_of_center_position=112718085
 |entrez_id=58493
 |gc_percent=0.686567
-|gene_alias=C9orf80
+|gene_alias=C9orf80{{!}}HSPC043{{!}}MISE{{!}}SOSSC{{!}}SSBIP1{{!}}hSSBIP1
 |gene_description=INTS3 and NABP interacting protein
 |gene_id=58493
@@ Line 24: / Line 24: @@
 |hgnc_mgi_id=HGNC:24994
 |nearest_ensembl=ENSG00000148153
-|nearest_promoter_id=NM_001329590
+|nearest_promoter_id=NR_138056
 |nearest_refseq=NM_021218
 |nearest_unigene=Hs.658575
-|num_trans=19
+|num_trans=24
 |species=human
 |start=112718023
 |start_of_center_position=112718084
 |strand=-
-|tata_box="43(CCCTTTAAGAGC,+,0.00),43(CCCTTTAAGAGC,-,0.00),44(CCTTTAAGAGCA,+,0.00)"
+|tata_box=43(CCCTTTAAGAGC,+,0.00),43(CCCTTTAAGAGC,-,0.00),44(CCTTTAAGAGCA,+,0.00)
-|transcript_name=ENST00000497712.6 ENST00000481146.6 ENST00000374234.1 ENST00000476599.2 NM_021218 uc064vcp.1 uc064vcr.1 uc064vcs.1 uc064vct.1 BC014881 AK000637 BC065210 AF161409 AF161411 AK310007
+|transcript_name=ENST00000374242.9 ENST00000497712.6 ENST00000481146.6 ENST00000374234.1 ENST00000476599.2 NM_021218 NM_001329589 NR_138056 NM_001329590 NM_001329588 NM_001329587 NM_001329586 NM_001329585 NR_138054 NR_138055 BC014881 LF383873 MA619450 AK000637 BC065210 AF161409 AF161411 AK310007
 |tss_classification=yes
 |tss_id=hg_102074.1
 |tss_score=1
-|uniprot_id=Q5VWJ6 Q9NRY2
+|uniprot_id=Q5VWJ6 Q9NRY2 X6R8P6
 }}