TSS: Hg 102725.1: Difference between revisions
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{{TSSDetail | {{TSSDetail | ||
|CAT1= | |CAT1= | ||
|all_trans=LF346678:353 MA582255:353 | |||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.05 | |cpg_percent=0.05 | ||
|distance= | |distance=353 | ||
|distance_to_tss= | |distance_to_tss=8394 | ||
|end=129102401 | |end=129102401 | ||
|end_of_center_position=129102399 | |end_of_center_position=129102399 | ||
|entrez_id=1384 | |entrez_id=1384 | ||
|gc_percent=0.656716 | |gc_percent=0.656716 | ||
|gene_alias=CAT | |gene_alias=CAT{{!}}CAT1{{!}}NBIA8 | ||
|gene_description=carnitine O-acetyltransferase | |gene_description=carnitine O-acetyltransferase | ||
|gene_name=CRAT | |gene_name=CRAT | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000095321 | |nearest_ensembl=ENSG00000095321 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001346549 | ||
|nearest_refseq=NM_000755 | |nearest_refseq=NM_000755 | ||
|nearest_unigene=Hs.12068 | |nearest_unigene=Hs.12068 | ||
|num_trans= | |num_trans=2 | ||
|species=human | |species=human | ||
|start=129102396 | |start=129102396 | ||
|start_of_center_position=129102398 | |start_of_center_position=129102398 | ||
|strand=- | |strand=- | ||
|transcript_name= | |transcript_name=LF346678 MA582255 | ||
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_102725.1 | |tss_id=hg_102725.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 17:10, 15 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 8394 |
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| Nearest PromoterID: | NM_001346549 |
| Entrez ID: | 1384 |
| Nearest Unigene: | Hs.12068 |
| Nearest Refseq: | NM_000755 |
| Nearest Ensembl: | ENSG00000095321 |
| Gene Name: | CRAT |
| Gene Alias: | CAT|CAT1|NBIA8 |
| Gene Description: | carnitine O-acetyltransferase |
| Gene Type: | protein-coding |
| CpG%: | 0.05 |
| GC%: | 0.656716 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |