TSS: Mm 39336.1: Difference between revisions
From referenceTSS
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|Pgy-1= | |Pgy-1= | ||
|Pgy1= | |Pgy1= | ||
|all_trans=BC141363:-487 BC150811:-487 ENSMUST00000009058.9:-492 M14757:-492 | |all_trans=LF276188:153 MA511765:153 LF276189:286 MA511766:286 BC141363:-487 BC150811:-487 ENSMUST00000009058.9:-492 M14757:-492 | ||
|chr=chr5 | |chr=chr5 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
|distance= | |distance=153 | ||
|distance_to_tss= | |distance_to_tss=-158 | ||
|end=8798684 | |end=8798684 | ||
|end_of_center_position=8798681 | |end_of_center_position=8798681 | ||
|entrez_id= | |entrez_id=330031 | ||
|gc_percent=0.616915 | |gc_percent=0.616915 | ||
|gene_alias= | |gene_alias=A230021K14{{!}}EG330031 | ||
|gene_description= | |gene_description=predicted gene 5106 | ||
|gene_id=18669 | |gene_id=18669 | ||
|gene_name= | |gene_name=Gm5106 | ||
|gene_source=MGI:97568 | |gene_source=MGI:97568 | ||
|gene_symbol=Abcb1b | |gene_symbol=Abcb1b | ||
|gene_synonyms=Abcb1 Mdr1 Mdr1b Pgy-1 Pgy1 mdr | |gene_synonyms=Abcb1 Mdr1 Mdr1b Pgy-1 Pgy1 mdr | ||
|gene_type= | |gene_type=ncRNA | ||
|hgnc_mgi_id=MGI:97568 | |hgnc_mgi_id=MGI:97568 | ||
|mdr= | |mdr= | ||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id= | |nearest_promoter_id=NR_152133 | ||
|nearest_refseq= | |nearest_refseq=NR_152132 | ||
|nearest_unigene=Mm. | |nearest_unigene=Mm.389059 | ||
|num_trans= | |num_trans=8 | ||
|species=mouse | |species=mouse | ||
|start=8798677 | |start=8798677 | ||
|start_of_center_position=8798680 | |start_of_center_position=8798680 | ||
|strand=+ | |strand=+ | ||
|transcript_name= | |transcript_name=LF276188 MA511765 | ||
|tss_classification=no | |tss_classification=no | ||
|tss_id=mm_39336.1 | |tss_id=mm_39336.1 | ||
Revision as of 05:01, 21 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 5)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -158 |
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| Nearest PromoterID: | NR_152133 |
| Entrez ID: | 330031 |
| Nearest Unigene: | Mm.389059 |
| Nearest Refseq: | NR_152132 |
| Nearest Ensembl: | |
| Gene Name: | Gm5106 |
| Gene Alias: | A230021K14|EG330031 |
| Gene Description: | predicted gene 5106 |
| Gene Type: | ncRNA |
| CpG%: | 0.04 |
| GC%: | 0.616915 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
TSS expression
Expression data not found.