TSS: Mm 43621.1: Difference between revisions
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{{TSSDetail | {{TSSDetail | ||
|VIP/MOV34= | |VIP/MOV34= | ||
|all_trans=ENSMUST00000127881.7:-23 BC014286:-24 ENSMUST00000154867 | |all_trans=LF279944:0 MA515521:0 ENSMUST00000127881.7:-23 BC014286:-24 ENSMUST00000154867.1:25 AK138409:25 BC004664:-29 NM_012002:-30 ENSMUST00000110951.7:-32 AK146410:-32 AF071315:-34 AK146775:-41 ENSMUST00000019638.14:-61 LF279945:273 MA515522:273 | ||
|chr=chr5 | |chr=chr5 | ||
|cpg_percent=0.095 | |cpg_percent=0.095 | ||
|distance= | |distance=0 | ||
|distance_to_tss=36 | |distance_to_tss=36 | ||
|end=138161144 | |end=138161144 | ||
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|entrez_id=26893 | |entrez_id=26893 | ||
|gc_percent=0.666667 | |gc_percent=0.666667 | ||
|gene_alias=Sgn3 | |gene_alias=Sgn3{{!}}VIP/MOV34 | ||
|gene_description=COP9 signalosome subunit 6 | |gene_description=COP9 signalosome subunit 6 | ||
|gene_id=26893 | |gene_id=26893 | ||
|gene_name= | |gene_name=Cops6 | ||
|gene_source=MGI:1349439 | |gene_source=MGI:1349439 | ||
|gene_symbol=Cops6 | |gene_symbol=Cops6 | ||
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|nearest_refseq=NM_012002 | |nearest_refseq=NM_012002 | ||
|nearest_unigene=Mm.3981 | |nearest_unigene=Mm.3981 | ||
|num_trans= | |num_trans=15 | ||
|species=mouse | |species=mouse | ||
|start=138161131 | |start=138161131 | ||
|start_of_center_position=138161137 | |start_of_center_position=138161137 | ||
|strand=+ | |strand=+ | ||
|transcript_name= | |transcript_name=LF279944 MA515521 | ||
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_43621.1 | |tss_id=mm_43621.1 | ||
Latest revision as of 06:40, 21 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 5)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 36 |
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| Nearest PromoterID: | NM_012002 |
| Entrez ID: | 26893 |
| Nearest Unigene: | Mm.3981 |
| Nearest Refseq: | NM_012002 |
| Nearest Ensembl: | ENSMUSG00000019494 |
| Gene Name: | Cops6 |
| Gene Alias: | Sgn3|VIP/MOV34 |
| Gene Description: | COP9 signalosome subunit 6 |
| Gene Type: | protein-coding |
| CpG%: | 0.095 |
| GC%: | 0.666667 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
TSS expression
Expression data not found.