TSS: Mm 104527.1: Difference between revisions
From referenceTSS
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|Ndp52= | |Ndp52= | ||
|Ndp52l1= | |Ndp52l1= | ||
|all_trans=ENSMUST00000068686.12:0 ENSMUST00000097162.5:0 NM_001271018 | |all_trans=ENSMUST00000068686.12:0 ENSMUST00000097162.5:0 NM_001271018:0 AF490344:0 AK010816:0 AK167172:0 AK166710:0 AK166756:0 AK167009:0 AK167291:0 AK145542:0 AK166939:1 | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
| Line 12: | Line 12: | ||
|entrez_id=76815 | |entrez_id=76815 | ||
|gc_percent=0.59204 | |gc_percent=0.59204 | ||
|gene_alias=2410154J16Rik | |gene_alias=2410154J16Rik{{!}}C77254{{!}}Ndp52{{!}}Ndp52l1 | ||
|gene_description=calcium binding and coiled-coil domain 2 | |gene_description=calcium binding and coiled-coil domain 2 | ||
|gene_id=76815 | |gene_id=76815 | ||
| Line 25: | Line 25: | ||
|nearest_refseq=NM_029755 | |nearest_refseq=NM_029755 | ||
|nearest_unigene=Mm.296049 | |nearest_unigene=Mm.296049 | ||
|num_trans= | |num_trans=12 | ||
|species=mouse | |species=mouse | ||
|start=96111958 | |start=96111958 | ||
|start_of_center_position=96111975 | |start_of_center_position=96111975 | ||
|strand=- | |strand=- | ||
|transcript_name=ENSMUST00000068686.12 ENSMUST00000097162.5 NM_001271018 | |transcript_name=ENSMUST00000068686.12 ENSMUST00000097162.5 NM_001271018 AF490344 AK010816 AK167172 AK166710 AK166756 AK167009 AK167291 AK145542 | ||
|tss_classification=no | |tss_classification=no | ||
|tss_id=mm_104527.1 | |tss_id=mm_104527.1 | ||
Revision as of 17:53, 19 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 5)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -13 |
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| Nearest PromoterID: | NM_001271018 |
| Entrez ID: | 76815 |
| Nearest Unigene: | Mm.296049 |
| Nearest Refseq: | NM_029755 |
| Nearest Ensembl: | ENSMUSG00000006056 |
| Gene Name: | calcium binding and coiled-coil domain 2 |
| Gene Alias: | 2410154J16Rik|C77254|Ndp52|Ndp52l1 |
| Gene Description: | calcium binding and coiled-coil domain 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.59204 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
TSS expression
Expression data not found.