TSS: Mm 54684.1: Difference between revisions
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|all_trans=AK188467:0 ENSMUST00000114822.1:-28 AK078962:-28 ENSMUST00000051671.10:-88 BC003329:-88 NM_018810 | |all_trans=AK188467:0 ENSMUST00000114822.1:-28 AK078962:-28 ENSMUST00000051671.10:-88 BC003329:-88 NM_018810:-99 AK077060:-99 AF192785:-117 AB026986:-168 ENSMUST00000122996.7:177 ENSMUST00000031985.12:-192 AK005137:301 ENSMUST00000114823.7:468 NM_001311109:468 AK029500:468 ENSMUST00000146785.7:487 | ||
|chr=chr6 | |chr=chr6 | ||
|cpg_percent=0.08 | |cpg_percent=0.08 | ||
| Line 10: | Line 10: | ||
|gc_percent=0.656716 | |gc_percent=0.656716 | ||
|gene_alias=RFP | |gene_alias=RFP | ||
|gene_description= | |gene_description=makorin, ring finger protein, 1 | ||
|gene_name=Mkrn1 | |gene_name=Mkrn1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| Line 17: | Line 17: | ||
|nearest_refseq=NM_018810 | |nearest_refseq=NM_018810 | ||
|nearest_unigene=Mm.270484 | |nearest_unigene=Mm.270484 | ||
|num_trans= | |num_trans=16 | ||
|species=mouse | |species=mouse | ||
|start=39420243 | |start=39420243 | ||
Latest revision as of 10:54, 21 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 5)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 112 |
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| Nearest PromoterID: | NM_018810 |
| Entrez ID: | 54484 |
| Nearest Unigene: | Mm.270484 |
| Nearest Refseq: | NM_018810 |
| Nearest Ensembl: | ENSMUSG00000029922 |
| Gene Name: | Mkrn1 |
| Gene Alias: | RFP |
| Gene Description: | makorin, ring finger protein, 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.08 |
| GC%: | 0.656716 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |