TSS: Hg 184599.1: Difference between revisions
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{{TSSDetail | {{TSSDetail | ||
|CHICA= | |CHICA= | ||
|all_trans= | |all_trans=ENST00000619850.2:0 NM_030919:0 AK303860:0 BC001068:2 BC006553:2 BC080188:2 BC063661:3 BC053683:5 ENST00000619304.4:-94 AK055793:-94 MP014850:331 AL832274:450 | ||
|chr=chr20 | |chr=chr20 | ||
|cpg_percent=0.11 | |cpg_percent=0.11 | ||
|dJ616B8.3= | |dJ616B8.3= | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=-2 | ||
|end=38926424 | |end=38926424 | ||
|end_of_center_position=38926415 | |end_of_center_position=38926415 | ||
|entrez_id=81610 | |entrez_id=81610 | ||
|gc_percent=0.686567 | |gc_percent=0.686567 | ||
|gene_alias=C20orf129 | |gene_alias=C20orf129{{!}}CHICA{{!}}dJ616B8.3 | ||
|gene_description=family with sequence similarity 83 member D | |gene_description=family with sequence similarity 83 member D | ||
|gene_id=81610 | |gene_id=81610 | ||
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|gene_source=HGNC:16122 | |gene_source=HGNC:16122 | ||
|gene_symbol=FAM83D | |gene_symbol=FAM83D | ||
|gene_synonyms=dJ616B8.3 | |gene_synonyms=CHICA dJ616B8.3 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:16122 | |hgnc_mgi_id=HGNC:16122 | ||
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|nearest_refseq=NM_030919 | |nearest_refseq=NM_030919 | ||
|nearest_unigene=Hs.726442 | |nearest_unigene=Hs.726442 | ||
|num_trans= | |num_trans=12 | ||
|species=human | |species=human | ||
|start=38926405 | |start=38926405 | ||
|start_of_center_position=38926414 | |start_of_center_position=38926414 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box=-33(GCCTATAAAGCG,+,0.00) | ||
|transcript_name=AK303860 | |transcript_name=ENST00000619850.2 NM_030919 AK303860 | ||
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_184599.1 | |tss_id=hg_184599.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id=Q9H4H8 | ||
}} | }} | ||
Revision as of 00:44, 17 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -2 |
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| Nearest PromoterID: | NM_030919 |
| Entrez ID: | 81610 |
| Nearest Unigene: | Hs.726442 |
| Nearest Refseq: | NM_030919 |
| Nearest Ensembl: | ENSG00000101447 |
| Gene Name: | family with sequence similarity 83 member D |
| Gene Alias: | C20orf129|CHICA|dJ616B8.3 |
| Gene Description: | family with sequence similarity 83 member D |
| Gene Type: | protein-coding |
| CpG%: | 0.11 |
| GC%: | 0.686567 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -33(GCCTATAAAGCG,+,0.00) |
TSS expression
Expression data not found.