TSS: Hg 191322.1: Difference between revisions
From referenceTSS
No edit summary |
No edit summary |
||
| Line 2: | Line 2: | ||
|ST3= | |ST3= | ||
|STMY3= | |STMY3= | ||
|all_trans=ENST00000465730.1:0 ENST00000428253.1:0 | |all_trans=ENST00000465730.1:0 ENST00000428253.1:0 ENST00000215743.8:0 ENST00000437086.5:0 NM_005940:0 NR_133013:0 AK129792:0 AK075448:0 X57766:7 LF208792:-14 MA444369:-14 BC057788:15 LF322825:471 MA558402:471 | ||
|chr=chr22 | |chr=chr22 | ||
|cpg_percent=0.12 | |cpg_percent=0.12 | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=-4 | ||
|end=23772855 | |end=23772855 | ||
|end_of_center_position=23772845 | |end_of_center_position=23772845 | ||
|entrez_id=4320 | |entrez_id=4320 | ||
|gc_percent=0.776119 | |gc_percent=0.776119 | ||
|gene_alias=SL-3 | |gene_alias=SL-3{{!}}ST3{{!}}STMY3 | ||
|gene_description=matrix metallopeptidase 11 | |gene_description=matrix metallopeptidase 11 | ||
|gene_id=4320 | |gene_id=4320 | ||
| Line 29: | Line 29: | ||
|start_of_center_position=23772844 | |start_of_center_position=23772844 | ||
|strand=+ | |strand=+ | ||
|transcript_name=ENST00000465730.1 ENST00000428253.1 ENST00000437086.5 | |transcript_name=ENST00000465730.1 ENST00000428253.1 ENST00000215743.8 ENST00000437086.5 NM_005940 NR_133013 AK129792 AK075448 | ||
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_191322.1 | |tss_id=hg_191322.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=E9PED7 F8WDI7 | |uniprot_id=E9PED7 F8WDI7 P24347 | ||
}} | }} | ||
Revision as of 03:19, 17 June 2021
Basic information about the TSS
|
| |||||||||||||
| TSS cluster detected* |
|---|
* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | -4 |
|---|---|
| Nearest PromoterID: | NR_133013 |
| Entrez ID: | 4320 |
| Nearest Unigene: | Hs.143751 |
| Nearest Refseq: | NM_005940 |
| Nearest Ensembl: | ENSG00000099953 |
| Gene Name: | matrix metallopeptidase 11 |
| Gene Alias: | SL-3|ST3|STMY3 |
| Gene Description: | matrix metallopeptidase 11 |
| Gene Type: | protein-coding |
| CpG%: | 0.12 |
| GC%: | 0.776119 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
TSS expression
Expression data not found.