TSS: Mm 109016.1: Difference between revisions

Revision as of 19:38, 19 June 2021

Basic information about the TSS

TSS ID:	mm_109016.1
Species:	mouse
Chr:	chr12

Start:	103434214
End:	103434281
Strand:	+

TSS cluster detected^*

* The number of TSS cluster called studies (maximum 5)

Gene and protein annotation

Transcript_name:	ENSMUST00000122905.7 ENSMUST00000085065.11 AK003665 AK075797 BC125301 BC125636 AK169926
Distance:	0
GeneID:	52668
HGNC/MGI_ID:	MGI:1277180
UniProt_ID:

Gene_name:	interferon, alpha-inducible protein 27
Gene_symbol:	Ifi27
Gene_synonyms:	1110013J02Rik 2900026P10Rik D12Ertd647e Ifi27l1
Gene_source:	MGI:1277180

TATA-Box annotation

Distance to TSS:	59
Nearest PromoterID:	NM_194066
Entrez ID:	52668
Nearest Unigene:	Mm.2121
Nearest Refseq:	NM_026790
Nearest Ensembl:	ENSMUSG00000064215
Gene Name:	interferon, alpha-inducible protein 27
Gene Alias:	1110013J02Rik\|2900026P10Rik\|D12Ertd647e\|ISG12a\|Ifi27l1
Gene Description:	interferon, alpha-inducible protein 27
Gene Type:	protein-coding
CpG%:	0.02
GC%:	0.477612
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 4: / Line 4: @@
 |ISG12a=
 |Ifi27l1=
-|all_trans=ENSMUST00000122905.7:0 ENSMUST00000085065.11:0 AK003665:0 AK075797:0 BC125301:0 BC125636:0 AK169926:0 ENSMUST00000066701.12:-3 AK146231:-3 ENSMUST00000079294.11:-4 ENSMUST00000076788.11:-4 ENSMUST00000076702.11:-4 ENSMUST00000148824.1:4 AJ566111:-4 AJ566112:-4 AJ566113:-4 AJ566114:-4 AJ566115:-4 BC128276:9 ENSMUST00000140838.1:11 AK187394:11 NM_026790:-26 NM_194069:-26 NM_194068:-26 NM_194067:-26 NM_194066:-26 uc007ovo.2:-26 uc007ovp.2:-26 uc007ovq.2:-26 uc007ovr.2:-26 uc007ovs.2:-26 uc007ovt.2:-26
+|all_trans=ENSMUST00000122905.7:0 ENSMUST00000085065.11:0 AK003665:0 AK075797:0 BC125301:0 BC125636:0 AK169926:0 ENSMUST00000066701.12:-3 AK146231:-3 ENSMUST00000079294.11:-4 ENSMUST00000076788.11:-4 ENSMUST00000076702.11:-4 ENSMUST00000148824.1:4 AJ566111:-4 AJ566112:-4 AJ566113:-4 AJ566114:-4 AJ566115:-4 BC128276:9 ENSMUST00000140838.1:11 AK187394:11 NM_001364174:-26 NM_001364173:-26 NM_194069:-26 NM_194068:-26 NM_194067:-26 NM_194066:-26 NM_026790:-26 LF199296:-41 MA434873:-41 LF199295:-343 MA434872:-343
 |chr=chr12
 |cpg_percent=0.02
@@ Line 13: / Line 13: @@
 |entrez_id=52668
 |gc_percent=0.477612
-|gene_alias=1110013J02Rik
+|gene_alias=1110013J02Rik{{!}}2900026P10Rik{{!}}D12Ertd647e{{!}}ISG12a{{!}}Ifi27l1
-|gene_description="interferon, alpha-inducible protein 27"
+|gene_description=interferon, alpha-inducible protein 27
 |gene_id=52668
-|gene_name="interferon, alpha-inducible protein 27"
+|gene_name=interferon, alpha-inducible protein 27
 |gene_source=MGI:1277180
 |gene_symbol=Ifi27
@@ Line 23: / Line 23: @@
 |hgnc_mgi_id=MGI:1277180
 |nearest_ensembl=ENSMUSG00000064215
-|nearest_promoter_id=NM_194069
+|nearest_promoter_id=NM_194066
 |nearest_refseq=NM_026790
 |nearest_unigene=Mm.2121