TSS: Mm 66742.1: Difference between revisions
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|SPACIA1= | |SPACIA1= | ||
|all_trans=ENSMUST00000143082. | |all_trans=ENSMUST00000143082.3:0 ENSMUST00000210628.1:0 ENSMUST00000209780.1:0 NM_030233:0 AK132193:0 AK030833:0 AK019878:0 BC068127:0 AK033202:0 BC087944:0 AK134418:0 AK035874:0 ENSMUST00000209797.1:2 BC019985:8 AB489137:11 AK188688:133 | ||
|chr=chr7 | |chr=chr7 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
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|entrez_id=78935 | |entrez_id=78935 | ||
|gc_percent=0.686567 | |gc_percent=0.686567 | ||
|gene_alias=5031425D22Rik | |gene_alias=5031425D22Rik{{!}}SPACIA1 | ||
|gene_description=serum amyloid A-like 1 | |gene_description=serum amyloid A-like 1 | ||
|gene_id=78935 | |gene_id=78935 | ||
| Line 28: | Line 28: | ||
|start_of_center_position=46710664 | |start_of_center_position=46710664 | ||
|strand=- | |strand=- | ||
|transcript_name=ENSMUST00000143082. | |transcript_name=ENSMUST00000143082.3 ENSMUST00000210628.1 ENSMUST00000209780.1 NM_030233 AK132193 AK030833 AK019878 BC068127 AK033202 BC087944 AK134418 AK035874 | ||
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_66742.1 | |tss_id=mm_66742.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=G1UCX4 Q9D2C2 | |uniprot_id=G1UCX4 Q9D2C2 | ||
}} | }} | ||
Revision as of 15:33, 21 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 5)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -14 |
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| Nearest PromoterID: | NM_030233 |
| Entrez ID: | 78935 |
| Nearest Unigene: | Mm.289866 |
| Nearest Refseq: | NM_030233 |
| Nearest Ensembl: | ENSMUSG00000006763 |
| Gene Name: | serum amyloid A-like 1 |
| Gene Alias: | 5031425D22Rik|SPACIA1 |
| Gene Description: | serum amyloid A-like 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.686567 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
TSS expression
Expression data not found.