TSS: Hg 100602.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.135 |distance_to_tss=82 |entrez_id=84904 |gc_percent=0.731343 |gene_alias=C9orf100 |gene_description=Rho guanine nucleotide exchange factor 39 |gene...") |
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{{TSSDetail | {{TSSDetail | ||
|all_trans=ENST00000475323.5:0 ENST00000490970.5:0 uc064sxu.1:0 uc064sxv.1:0 AK027548:0 AK225501:0 AK225529:0 BC033666:0 KJ895049:0 CU689686:0 AK303513:0 NM_032818:-52 ENST00000378387.3:-58 uc003zxm.2:-58 AY390225:-58 AY390226:-58 ENST00000468876.1:341 uc064sxx.1:341 | |||
|chr=chr9 | |||
|cpg_percent=0.135 | |cpg_percent=0.135 | ||
|distance=0 | |||
|distance_to_tss=82 | |distance_to_tss=82 | ||
|end=35665229 | |||
|entrez_id=84904 | |entrez_id=84904 | ||
|gc_percent=0.731343 | |gc_percent=0.731343 | ||
|gene_alias=C9orf100 | |gene_alias=C9orf100 | ||
|gene_description=Rho guanine nucleotide exchange factor 39 | |gene_description=Rho guanine nucleotide exchange factor 39 | ||
|gene_name=ARHGEF39 | |gene_id=84904 | ||
|gene_name=Rho guanine nucleotide exchange factor 39 | |||
|gene_source=HGNC:25909 | |||
|gene_symbol=ARHGEF39 | |||
|gene_synonyms=FLJ14642 | |||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:25909 | |||
|nearest_ensembl=ENSG00000137135 | |nearest_ensembl=ENSG00000137135 | ||
|nearest_promoter_id=NM_032818 | |nearest_promoter_id=NM_032818 | ||
|nearest_refseq=NM_032818 | |nearest_refseq=NM_032818 | ||
|nearest_unigene=Hs.534579 | |nearest_unigene=Hs.534579 | ||
|num_trans=18 | |||
|species=human | |||
|start=35665168 | |||
|strand=- | |||
|transcript_name=ENST00000475323.5 ENST00000490970.5 uc064sxu.1 uc064sxv.1 AK027548 AK225501 AK225529 BC033666 KJ895049 CU689686 AK303513 | |||
|tss_classification=yes | |||
|tss_id=hg_100602.1 | |tss_id=hg_100602.1 | ||
|tss_score=1 | |||
|uniprot_id=B4E0T1 Q8N4T4 | |||
}} | }} |
Revision as of 17:12, 8 March 2018
Basic information about the TSS
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TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
Distance to TSS: | 82 |
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Nearest PromoterID: | NM_032818 |
Entrez ID: | 84904 |
Nearest Unigene: | Hs.534579 |
Nearest Refseq: | NM_032818 |
Nearest Ensembl: | ENSG00000137135 |
Gene Name: | Rho guanine nucleotide exchange factor 39 |
Gene Alias: | C9orf100 |
Gene Description: | Rho guanine nucleotide exchange factor 39 |
Gene Type: | protein-coding |
CpG%: | 0.135 |
GC%: | 0.731343 |
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
TSS expression
Expression data not found.