TSS: Hg 100610.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.02 |distance_to_tss=5786 |entrez_id=7169 |gc_percent=0.492537 |gene_alias=AMCD1|DA1|DA2B|HEL-S-273|NEM4|TMSB |gene_description=tropomyosin 2 (beta)...") |
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{{TSSDetail | {{TSSDetail | ||
|DA1= | |||
|DA2B= | |||
|HEL-S-273= | |||
|NEM4= | |||
|TMSB= | |||
|chr=chr9 | |||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
|distance= | |||
|distance_to_tss=5786 | |distance_to_tss=5786 | ||
|end=35684273 | |||
|entrez_id=7169 | |entrez_id=7169 | ||
|gc_percent=0.492537 | |gc_percent=0.492537 | ||
| Line 12: | Line 20: | ||
|nearest_refseq=NM_003289 | |nearest_refseq=NM_003289 | ||
|nearest_unigene=Hs.300772 | |nearest_unigene=Hs.300772 | ||
|num_trans=0 | |||
|species=human | |||
|start=35684266 | |||
|strand=- | |||
|tata_box="34(GCCTTTATAAGT,-,0.00)" | |tata_box="34(GCCTTTATAAGT,-,0.00)" | ||
|transcript_name= | |||
|tss_classification=no | |||
|tss_id=hg_100610.1 | |tss_id=hg_100610.1 | ||
|tss_score=1 | |||
}} | }} | ||
Revision as of 17:12, 8 March 2018
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 5786 |
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| Nearest PromoterID: | NM_001301227 |
| Entrez ID: | 7169 |
| Nearest Unigene: | Hs.300772 |
| Nearest Refseq: | NM_003289 |
| Nearest Ensembl: | ENSG00000198467 |
| Gene Name: | TPM2 |
| Gene Alias: | AMCD1 |
| Gene Description: | tropomyosin 2 (beta) |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.492537 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "34(GCCTTTATAAGT,-,0.00)" |