TSS: Hg 108615.1: Difference between revisions
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|all_trans=BC130594:102 BC132974:102 ENST00000377113.5:-178 uc001iqn.5:-178 BC040880:-180 NM_001010911:-200 KJ905106:233 LG052283:406 LG005775:417 LG053471:417 | |||
|bA418C1.3= | |||
|chr=chr10 | |||
|cpg_percent=0.095 | |cpg_percent=0.095 | ||
|distance=102 | |||
|distance_to_tss=219 | |distance_to_tss=219 | ||
|end=21497084 | |||
|entrez_id=399726 | |entrez_id=399726 | ||
|gc_percent=0.716418 | |gc_percent=0.716418 | ||
|gene_alias=C10orf114|bA418C1.3 | |gene_alias=C10orf114|bA418C1.3 | ||
|gene_description=cancer susceptibility candidate 10 | |gene_description=cancer susceptibility candidate 10 | ||
|gene_name=CASC10 | |gene_id=399726 | ||
|gene_name=cancer susceptibility candidate 10 | |||
|gene_source=HGNC:31448 | |||
|gene_symbol=CASC10 | |||
|gene_synonyms=bA418C1.3 | |||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:31448 | |||
|nearest_ensembl=ENSG00000204682 | |nearest_ensembl=ENSG00000204682 | ||
|nearest_promoter_id=NM_001010911 | |nearest_promoter_id=NM_001010911 | ||
|nearest_refseq=NM_001010911 | |nearest_refseq=NM_001010911 | ||
|nearest_unigene=Hs.315568 | |nearest_unigene=Hs.315568 | ||
|num_trans=10 | |||
|species=human | |||
|start=21497046 | |||
|strand=- | |||
|transcript_name=BC130594 BC132974 | |||
|tss_classification=yes | |||
|tss_id=hg_108615.1 | |tss_id=hg_108615.1 | ||
|tss_score=1 | |||
|uniprot_id= | |||
}} | }} | ||
Revision as of 23:52, 8 March 2018
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 219 |
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| Nearest PromoterID: | NM_001010911 |
| Entrez ID: | 399726 |
| Nearest Unigene: | Hs.315568 |
| Nearest Refseq: | NM_001010911 |
| Nearest Ensembl: | ENSG00000204682 |
| Gene Name: | cancer susceptibility candidate 10 |
| Gene Alias: | C10orf114 |
| Gene Description: | cancer susceptibility candidate 10 |
| Gene Type: | protein-coding |
| CpG%: | 0.095 |
| GC%: | 0.716418 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
TSS expression
Expression data not found.