TSS: Hg 71644.1: Difference between revisions

Revision as of 15:30, 14 May 2019

Basic information about the TSS

TSS cluster detected^*

* The number of TSS cluster called studies (maximum 16)

Gene and protein annotation

Transcript_name:	ENST00000397456.2 ENST00000429723.6 ENST00000507463.1 uc063lsa.1 uc011dic.3 uc063lsc.1 BC005291 AF054186 BT007306 DQ893502 CU675089 KJ904627 AB011079 EU176776
Distance:	0
GeneID:	100526837 9521
HGNC/MGI_ID:	HGNC:3212 HGNC:49187
UniProt_ID:	C9J1V9 D6RBD7 O43324

Gene_name:	EEF1E1-BLOC1S5 readthrough (NMD candidate); eukaryotic translation elongation factor 1 epsilon 1
Gene_symbol:	EEF1E1 EEF1E1-BLOC1S5
Gene_synonyms:	AIMP3
Gene_source:	HGNC:3212 HGNC:49187

TATA-Box annotation

Distance to TSS:	49
Nearest PromoterID:	NM_001135650
Entrez ID:	9521
Nearest Unigene:	Hs.602353
Nearest Refseq:	NM_004280
Nearest Ensembl:	ENSG00000124802
Gene Name:	EEF1E1-BLOC1S5 readthrough (NMD candidate); eukaryotic translation elongation factor 1 epsilon 1
Gene Alias:	AIMP3
Gene Description:	eukaryotic translation elongation factor 1 epsilon 1
Gene Type:	protein-coding
CpG%:	0.065
GC%:	0.587065
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetail
+|P18=
 |all_trans=ENST00000397456.2:0 ENST00000429723.6:0 ENST00000507463.1:0 uc063lsa.1:0 uc011dic.3:0 uc063lsc.1:0 BC005291:0 AF054186:0 BT007306:0 DQ893502:0 CU675089:0 KJ904627:0 AB011079:0 EU176776:0 ENST00000379715.9:-5 uc003mxz.4:-5 NR_037618:-22 NM_001135650:-22 NM_004280:-22 ENST00000502429.5:39 uc063lsb.1:39 ENST00000488226.2:474 uc063lse.1:474
 |chr=chr6
@@ Line 6: / Line 7: @@
 |distance_to_tss=49
 |end=8102573
+|end_of_center_position=8102547
 |entrez_id=9521
 |gc_percent=0.587065
-|gene_alias=AIMP3|P18
+|gene_alias=AIMP3
 |gene_description=eukaryotic translation elongation factor 1 epsilon 1
 |gene_id=100526837 9521
@@ Line 24: / Line 26: @@
 |species=human
 |start=8102519
+|start_of_center_position=8102546
 |strand=-
 |transcript_name=ENST00000397456.2 ENST00000429723.6 ENST00000507463.1 uc063lsa.1 uc011dic.3 uc063lsc.1 BC005291 AF054186 BT007306 DQ893502 CU675089 KJ904627 AB011079 EU176776