TSS: Mm 146299.1: Difference between revisions

Revision as of 18:29, 14 May 2019

Basic information about the TSS

TSS ID:	mm_146299.1
Species:	mouse
Chr:	chr18

Start:	80206775
End:	80206881
Strand:	+

TSS cluster detected^*

* The number of TSS cluster called studies (maximum 5)

Gene and protein annotation

Transcript_name:	ENSMUST00000145963.7 ENSMUST00000125127.7 ENSMUST00000145116.7 ENSMUST00000126177.7 ENSMUST00000025464.7 ENSMUST00000025463.13 NM_001038608 NM_025299 NM_178604 NM_001042408 uc008fsn.1 uc008fso.1 uc008fsp.1 uc008fsq.1 AK010599 AK148287 AK166497 BC029327 AK007331 AK004039 BC025053 AK171121 BC031634 BC014770 BC003876
Distance:	0
GeneID:	27366
HGNC/MGI_ID:	MGI:1351613 MGI:3833940
UniProt_ID:	F8WGE7 P83877 Q3TBP4 Q78JM7 Q9CQX6

Gene_name:	predicted gene 16286; thioredoxin-like 4A
Gene_symbol:	Gm16286 Txnl4a
Gene_synonyms:	D18Wsu98e ENSMUSG00000057130 Txnl4 U5-15kDa
Gene_source:	MGI:1351613 MGI:3833940

TATA-Box annotation

Distance to TSS:	-18
Nearest PromoterID:	NM_178604
Entrez ID:	27366
Nearest Unigene:	Mm.172411
Nearest Refseq:	NM_025299
Nearest Ensembl:	ENSMUSG00000057130
Gene Name:	predicted gene 16286; thioredoxin-like 4A
Gene Alias:	D18Wsu98e
Gene Description:	thioredoxin-like 4A
Gene Type:	protein-coding
CpG%:	0.135
GC%:	0.716418
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetail
+|Dim1=
+|ENSMUSG00000057130=
+|Txnl4=
+|U5-15kD=
+|U5-15kDa=
 |all_trans=ENSMUST00000145963.7:0 ENSMUST00000125127.7:0 ENSMUST00000145116.7:0 ENSMUST00000126177.7:0 ENSMUST00000025464.7:0 ENSMUST00000025463.13:0 NM_001038608:0 NM_025299:0 NM_178604:0 NM_001042408:0 uc008fsn.1:0 uc008fso.1:0 uc008fsp.1:0 uc008fsq.1:0 AK010599:0 AK148287:0 AK166497:0 BC029327:0 AK007331:0 AK004039:0 BC025053:0 AK171121:0 BC031634:0 BC014770:0 BC003876:0 ENSMUST00000156400.7:-11 ENSMUST00000126360.1:13 ENSMUST00000127234.7:14 AK011717:14 ENSMUST00000155879.1:32 ENSMUST00000125352.1:37 uc008fsr.2:273 ENSMUST00000153363.1:379 AK183568:379 AK185350:379 AK187706:379 AK187751:379 AK189069:379 AK198184:379 AK218707:379 AK181260:379 AK189366:382 AK184254:382
 |chr=chr18
@@ Line 6: / Line 11: @@
 |distance_to_tss=-18
 |end=80206881
+|end_of_center_position=80206829
 |entrez_id=27366
 |gc_percent=0.716418
-|gene_alias=D18Wsu98e|Dim1|ENSMUSG00000057130|Txnl4|U5-15kD|U5-15kDa
+|gene_alias=D18Wsu98e
 |gene_description=thioredoxin-like 4A
 |gene_id=27366
@@ Line 24: / Line 30: @@
 |species=mouse
 |start=80206775
+|start_of_center_position=80206828
 |strand=+
 |transcript_name=ENSMUST00000145963.7 ENSMUST00000125127.7 ENSMUST00000145116.7 ENSMUST00000126177.7 ENSMUST00000025464.7 ENSMUST00000025463.13 NM_001038608 NM_025299 NM_178604 NM_001042408 uc008fsn.1 uc008fso.1 uc008fsp.1 uc008fsq.1 AK010599 AK148287 AK166497 BC029327 AK007331 AK004039 BC025053 AK171121 BC031634 BC014770 BC003876