TSS: Mm 153986.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENSMUST00000175225.1:-13 AK165192:-13 AK171911:-14 BC063749:-21 ENSMUST00000026048.9:-27 AK014581:-27 AK220222:30 AK014762:36 ENSMUST00000095998.5:-39 N...") |
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{{TSSDetail | {{TSSDetail | ||
|DANGER= | |||
|all_trans=ENSMUST00000175225.1:-13 AK165192:-13 AK171911:-14 BC063749:-21 ENSMUST00000026048.9:-27 AK014581:-27 AK220222:30 AK014762:36 ENSMUST00000095998.5:-39 NM_001001738:-39 uc008hvn.1:-39 uc008hvu.1:-39 uc008hvv.1:-39 AK171539:39 AK160686:-39 AK171522:40 | |all_trans=ENSMUST00000175225.1:-13 AK165192:-13 AK171911:-14 BC063749:-21 ENSMUST00000026048.9:-27 AK014581:-27 AK220222:30 AK014762:36 ENSMUST00000095998.5:-39 NM_001001738:-39 uc008hvn.1:-39 uc008hvu.1:-39 uc008hvv.1:-39 AK171539:39 AK160686:-39 AK171522:40 | ||
|chr=chr19 | |chr=chr19 | ||
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|distance_to_tss=50 | |distance_to_tss=50 | ||
|end=47919260 | |end=47919260 | ||
|end_of_center_position=47919249 | |||
|entrez_id=414801 | |entrez_id=414801 | ||
|gc_percent=0.606965 | |gc_percent=0.606965 | ||
|gene_alias=4833424O12Rik | |gene_alias=4833424O12Rik | ||
|gene_description="inositol 1,4,5-triphosphate receptor interacting protein" | |gene_description="inositol 1,4,5-triphosphate receptor interacting protein" | ||
|gene_id=414801 | |gene_id=414801 | ||
| Line 17: | Line 19: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=MGI:3042776 MGI:5452017 | |hgnc_mgi_id=MGI:3042776 MGI:5452017 | ||
|mKIAA1754= | |||
|nearest_ensembl=ENSMUSG00000044948 | |nearest_ensembl=ENSMUSG00000044948 | ||
|nearest_promoter_id=NM_001001738 | |nearest_promoter_id=NM_001001738 | ||
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|species=mouse | |species=mouse | ||
|start=47919237 | |start=47919237 | ||
|start_of_center_position=47919248 | |||
|strand=- | |strand=- | ||
|tata_box="-84(GTTCTTATAAGG,-,0.00),-82(TCTTATAAGGAG,+,0.00)" | |tata_box="-84(GTTCTTATAAGG,-,0.00),-82(TCTTATAAGGAG,+,0.00)" | ||
Revision as of 23:47, 14 May 2019
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 5)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 50 |
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| Nearest PromoterID: | NM_001001738 |
| Entrez ID: | 414801 |
| Nearest Unigene: | Mm.29457 |
| Nearest Refseq: | NM_001001738 |
| Nearest Ensembl: | ENSMUSG00000044948 |
| Gene Name: | "inositol 1,4,5-triphosphate receptor interacting protein; predicted gene, 22240" |
| Gene Alias: | 4833424O12Rik |
| Gene Description: | "inositol 1,4,5-triphosphate receptor interacting protein" |
| Gene Type: | protein-coding |
| CpG%: | 0.08 |
| GC%: | 0.606965 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-84(GTTCTTATAAGG,-,0.00),-82(TCTTATAAGGAG,+,0.00)" |
TSS expression
Expression data not found.