TSS: Mm 17761.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENSMUST00000102813.1:0 AK006127:0 NM_025619:20 uc008jgz.1:20 BC118617:20 BC121825:20 |chr=chr2 |cpg_percent=0.005 |distance=0 |distance_to_tss=-30 |end=...") |
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| Line 6: | Line 6: | ||
|distance_to_tss=-30 | |distance_to_tss=-30 | ||
|end=32784446 | |end=32784446 | ||
|end_of_center_position=32784436 | |||
|entrez_id=227736 | |entrez_id=227736 | ||
|gc_percent=0.487562 | |gc_percent=0.487562 | ||
| Line 24: | Line 25: | ||
|species=mouse | |species=mouse | ||
|start=32784424 | |start=32784424 | ||
|start_of_center_position=32784435 | |||
|strand=- | |strand=- | ||
|tata_box="-54(GCCCTTTAAAAC,-,0.00),-53(CCCTTTAAAACC,+,0.00),-52(CCTTTAAAACCC,+,0.00),8(GCTTCTTAAAGG,-,0.00),9(CTTCTTAAAGGG,+,0.00),21(GACTTTAAAAAG,-,0.00),23(CTTTAAAAAGTG,+,0.00)" | |tata_box="-54(GCCCTTTAAAAC,-,0.00),-53(CCCTTTAAAACC,+,0.00),-52(CCTTTAAAACCC,+,0.00),8(GCTTCTTAAAGG,-,0.00),9(CTTCTTAAAGGG,+,0.00),21(GACTTTAAAAAG,-,0.00),23(CTTTAAAAAGTG,+,0.00)" | ||
Revision as of 03:06, 15 May 2019
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 5)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -30 |
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| Nearest PromoterID: | NM_025619 |
| Entrez ID: | 227736 |
| Nearest Unigene: | Mm.441499 |
| Nearest Refseq: | NM_025619 |
| Nearest Ensembl: | ENSMUSG00000038987 |
| Gene Name: | cilia and flagella associated protein 157 |
| Gene Alias: | 1700019L03Rik |
| Gene Description: | cilia and flagella associated protein 157 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.487562 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-54(GCCCTTTAAAAC,-,0.00),-53(CCCTTTAAAACC,+,0.00),-52(CCTTTAAAACCC,+,0.00),8(GCTTCTTAAAGG,-,0.00),9(CTTCTTAAAGGG,+,0.00),21(GACTTTAAAAAG,-,0.00),23(CTTTAAAAAGTG,+,0.00)" |
TSS expression
Expression data not found.