TSS: Hg 100070.1: Difference between revisions
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|all_trans=LF355431:429 MA591008:429 | |||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
|distance= | |distance=429 | ||
|distance_to_tss=7604 | |distance_to_tss=7604 | ||
|end=15299766 | |end=15299766 | ||
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|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000155158 | |nearest_ensembl=ENSG00000155158 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_152574 | ||
|nearest_refseq=NM_152574 | |nearest_refseq=NM_152574 | ||
|nearest_unigene=Hs.563630 | |nearest_unigene=Hs.563630 | ||
|num_trans= | |num_trans=2 | ||
|species=human | |species=human | ||
|start=15299746 | |start=15299746 | ||
|start_of_center_position=15299756 | |start_of_center_position=15299756 | ||
|strand=- | |strand=- | ||
|transcript_name= | |transcript_name=LF355431 MA591008 | ||
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_100070.1 | |tss_id=hg_100070.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 17:29, 11 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 7604 |
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| Nearest PromoterID: | NM_152574 |
| Entrez ID: | 158219 |
| Nearest Unigene: | Hs.563630 |
| Nearest Refseq: | NM_152574 |
| Nearest Ensembl: | ENSG00000155158 |
| Gene Name: | TTC39B |
| Gene Alias: | C9orf52 |
| Gene Description: | tetratricopeptide repeat domain 39B |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.482587 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |