TSS: Hg 100090.1: Difference between revisions

Revision as of 17:29, 11 June 2021

Basic information about the TSS

TSS cluster detected^*

* The number of TSS cluster called studies (maximum 16)

Gene and protein annotation

TATA-Box annotation

Distance to TSS:	133243
Nearest PromoterID:	NM_001355547
Entrez ID:	203238
Nearest Unigene:	Hs.17267
Nearest Refseq:	NM_173550
Nearest Ensembl:	ENSG00000164989
Gene Name:	CCDC171
Gene Alias:	C9orf93
Gene Description:	coiled-coil domain containing 171
Gene Type:	protein-coding
CpG%:	0.005
GC%:	0.447761
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):	-88(TAGCTTAAAAGG,-,0.00),-86(GCTTAAAAGGTC,+,0.00)

@@ Line 4: / Line 4: @@
 |chr=chr9
 |cpg_percent=0.005
-|distance=
+|distance=NA
-|distance_to_tss=144214
+|distance_to_tss=133243
 |end=15697224
 |end_of_center_position=15697221
 |entrez_id=203238
 |gc_percent=0.447761
-|gene_alias=C9orf93
+|gene_alias=C9orf93|bA536D16.1|bA778P13.1
 |gene_description=coiled-coil domain containing 171
 |gene_name=CCDC171
 |gene_type=protein-coding
 |nearest_ensembl=ENSG00000164989
-|nearest_promoter_id=NM_001348002
+|nearest_promoter_id=NM_001355547
 |nearest_refseq=NM_173550
 |nearest_unigene=Hs.17267
@@ Line 23: / Line 23: @@
 |start_of_center_position=15697220
 |strand=-
-|tata_box="-88(TAGCTTAAAAGG,-,0.00),-86(GCTTAAAAGGTC,+,0.00)"
+|tata_box=-88(TAGCTTAAAAGG,-,0.00),-86(GCTTAAAAGGTC,+,0.00)
 |transcript_name=
 |tss_classification=no