TSS: Hg 1004.1: Difference between revisions
From referenceTSS
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|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
|distance= | |distance=NA | ||
|distance_to_tss=14694 | |distance_to_tss=14694 | ||
|end=17595248 | |end=17595248 | ||
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|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000074964 | |nearest_ensembl=ENSG00000074964 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001319837 | ||
|nearest_refseq=NM_018125 | |nearest_refseq=NM_018125 | ||
|nearest_unigene=Hs.443460 | |nearest_unigene=Hs.443460 | ||
| Line 21: | Line 21: | ||
|start_of_center_position=17595246 | |start_of_center_position=17595246 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box=-74(GTTTTTATAGAA,+,0.00),-7(TTTTTTAAAGCT,+,0.00) | ||
|transcript_name= | |transcript_name= | ||
|tss_classification=no | |tss_classification=no | ||
Latest revision as of 15:18, 15 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 14694 |
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| Nearest PromoterID: | NM_001319837 |
| Entrez ID: | 55160 |
| Nearest Unigene: | Hs.443460 |
| Nearest Refseq: | NM_018125 |
| Nearest Ensembl: | ENSG00000074964 |
| Gene Name: | ARHGEF10L |
| Gene Alias: | GrinchGEF |
| Gene Description: | Rho guanine nucleotide exchange factor 10 like |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.383085 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -74(GTTTTTATAGAA,+,0.00),-7(TTTTTTAAAGCT,+,0.00) |