TSS: Hg 100494.1: Difference between revisions
From referenceTSS
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|cpg_percent=0.03 | |cpg_percent=0.03 | ||
|distance=23 | |distance=23 | ||
|distance_to_tss= | |distance_to_tss=45608 | ||
|end=34224652 | |end=34224652 | ||
|end_of_center_position=34224652 | |end_of_center_position=34224652 | ||
|entrez_id=51271 | |entrez_id=51271 | ||
|gc_percent=0.437811 | |gc_percent=0.437811 | ||
|gene_alias=NAG20 | |gene_alias=NAG20|SPG80|UAP|UBAP|UBAP-1 | ||
|gene_description=ubiquitin associated protein 1 | |gene_description=ubiquitin associated protein 1 | ||
|gene_name=UBAP1 | |gene_name=UBAP1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000165006 | |nearest_ensembl=ENSG00000165006 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_016525 | ||
|nearest_refseq=NM_016525 | |nearest_refseq=NM_016525 | ||
|nearest_unigene=Hs.268963 | |nearest_unigene=Hs.268963 | ||
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|start_of_center_position=34224651 | |start_of_center_position=34224651 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box=-20(TACTCTAAAAAC,-,0.00) | ||
|transcript_name=ENST00000372214.3 | |transcript_name=ENST00000372214.3 | ||
|tss_classification=no | |tss_classification=no | ||
Revision as of 15:21, 15 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 45608 |
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| Nearest PromoterID: | NM_016525 |
| Entrez ID: | 51271 |
| Nearest Unigene: | Hs.268963 |
| Nearest Refseq: | NM_016525 |
| Nearest Ensembl: | ENSG00000165006 |
| Gene Name: | UBAP1 |
| Gene Alias: | NAG20 |
| Gene Description: | ubiquitin associated protein 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.437811 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -20(TACTCTAAAAAC,-,0.00) |