TSS: Hg 100581.1: Difference between revisions
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{{TSSDetail | {{TSSDetail | ||
|all_trans=ENST00000660258.1:-342 | |||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
|distance= | |distance=-342 | ||
|distance_to_tss= | |distance_to_tss=1515 | ||
|end=35491627 | |end=35491627 | ||
|end_of_center_position=35491626 | |end_of_center_position=35491626 | ||
|entrez_id=9853 | |entrez_id=9853 | ||
|gc_percent=0.487562 | |gc_percent=0.487562 | ||
|gene_alias=Iporin | |gene_alias=Iporin|MRT61 | ||
|gene_description=RUN and SH3 domain containing 2 | |gene_description=RUN and SH3 domain containing 2 | ||
|gene_name=RUSC2 | |gene_name=RUSC2 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000198853 | |nearest_ensembl=ENSG00000198853 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001330740 | ||
|nearest_refseq=NM_014806 | |nearest_refseq=NM_014806 | ||
|nearest_unigene=Hs.493796 | |nearest_unigene=Hs.493796 | ||
|num_trans= | |num_trans=1 | ||
|species=human | |species=human | ||
|start=35491624 | |start=35491624 | ||
|start_of_center_position=35491625 | |start_of_center_position=35491625 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box=-34(GACTTTATAAAG,-,0.00),-32(CTTTATAAAGAC,+,0.00) | ||
|transcript_name= | |transcript_name=ENST00000660258.1 | ||
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_100581.1 | |tss_id=hg_100581.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Revision as of 15:23, 15 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 1515 |
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| Nearest PromoterID: | NM_001330740 |
| Entrez ID: | 9853 |
| Nearest Unigene: | Hs.493796 |
| Nearest Refseq: | NM_014806 |
| Nearest Ensembl: | ENSG00000198853 |
| Gene Name: | RUSC2 |
| Gene Alias: | Iporin |
| Gene Description: | RUN and SH3 domain containing 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.487562 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -34(GACTTTATAAAG,-,0.00),-32(CTTTATAAAGAC,+,0.00) |