TSS: Hg 100599.1: Difference between revisions
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|SIT-R= | |SIT-R= | ||
|all_trans=AK093793:-41 ENST00000486859.5 | |all_trans=AK093793:-41 ENST00000486859.5:106 AB527705:-194 ENST00000474403.1:-248 ENST00000259608.8:-269 NM_014450:-269 AK314758:-269 AJ010059:-278 JQ924063:-278 BC102029:-286 BC104491:-286 BC107484:-286 ENST00000618781.1:-288 | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
|distance=-41 | |distance=-41 | ||
|distance_to_tss= | |distance_to_tss=312 | ||
|end=35650662 | |end=35650662 | ||
|end_of_center_position=35650619 | |end_of_center_position=35650619 | ||
|entrez_id=27240 | |entrez_id=27240 | ||
|gc_percent=0.646766 | |gc_percent=0.646766 | ||
|gene_alias=SIT | |gene_alias=SIT|SIT-R | ||
|gene_description=signaling threshold regulating transmembrane adaptor 1 | |gene_description=signaling threshold regulating transmembrane adaptor 1 | ||
|gene_name=SIT1 | |gene_name=SIT1 | ||
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|nearest_refseq=NM_014450 | |nearest_refseq=NM_014450 | ||
|nearest_unigene=Hs.88012 | |nearest_unigene=Hs.88012 | ||
|num_trans= | |num_trans=13 | ||
|species=human | |species=human | ||
|start=35650575 | |start=35650575 | ||
|start_of_center_position=35650618 | |start_of_center_position=35650618 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box=19(CCTCTTAGGGGC,+,0.00) | ||
|transcript_name=AK093793 | |transcript_name=AK093793 | ||
|tss_classification=yes | |tss_classification=yes | ||
Revision as of 15:23, 15 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 312 |
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| Nearest PromoterID: | NM_014450 |
| Entrez ID: | 27240 |
| Nearest Unigene: | Hs.88012 |
| Nearest Refseq: | NM_014450 |
| Nearest Ensembl: | ENSG00000137078 |
| Gene Name: | SIT1 |
| Gene Alias: | SIT |
| Gene Description: | signaling threshold regulating transmembrane adaptor 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.646766 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 19(CCTCTTAGGGGC,+,0.00) |