TSS: Hg 100781.1: Difference between revisions
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{{TSSDetail | {{TSSDetail | ||
|all_trans=ENST00000637493.1:-294 | |||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
|distance= | |distance=-294 | ||
|distance_to_tss=99044 | |distance_to_tss=99044 | ||
|end=38720134 | |end=38720134 | ||
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|gene_alias=C9orf122 | |gene_alias=C9orf122 | ||
|gene_description=family with sequence similarity 201 member A | |gene_description=family with sequence similarity 201 member A | ||
|gene_name= | |gene_id= | ||
|gene_name=family with sequence similarity 240 member B | |||
|gene_source=HGNC:53430 | |||
|gene_symbol=FAM240B | |||
|gene_synonyms= | |||
|gene_type=ncRNA | |gene_type=ncRNA | ||
|hgnc_mgi_id=HGNC:53430 | |||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id=NR_027294 | |nearest_promoter_id=NR_027294 | ||
|nearest_refseq=NR_027294 | |nearest_refseq=NR_027294 | ||
|nearest_unigene=Hs.632652 | |nearest_unigene=Hs.632652 | ||
|num_trans= | |num_trans=1 | ||
|species=human | |species=human | ||
|start=38720129 | |start=38720129 | ||
|start_of_center_position=38720131 | |start_of_center_position=38720131 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box=-32(CCTTATATAGGG,+,0.00),-32(CCTTATATAGGG,-,0.00) | ||
|transcript_name= | |transcript_name=ENST00000637493.1 | ||
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_100781.1 | |tss_id=hg_100781.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=A0A1B0GVZ2 | |||
}} | }} | ||
Revision as of 15:27, 15 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 99044 |
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| Nearest PromoterID: | NR_027294 |
| Entrez ID: | 158228 |
| Nearest Unigene: | Hs.632652 |
| Nearest Refseq: | NR_027294 |
| Nearest Ensembl: | |
| Gene Name: | family with sequence similarity 240 member B |
| Gene Alias: | C9orf122 |
| Gene Description: | family with sequence similarity 201 member A |
| Gene Type: | ncRNA |
| CpG%: | 0.015 |
| GC%: | 0.502488 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -32(CCTTATATAGGG,+,0.00),-32(CCTTATATAGGG,-,0.00) |
TSS expression
Expression data not found.