TSS: Hg 100858.1: Difference between revisions
From referenceTSS
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|BTEB1= | |BTEB1= | ||
|all_trans=LF345225:436 MA580802:436 | |||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.14 | |cpg_percent=0.14 | ||
|distance= | |distance=436 | ||
|distance_to_tss=-4483 | |distance_to_tss=-4483 | ||
|end=70419143 | |end=70419143 | ||
Line 9: | Line 10: | ||
|entrez_id=687 | |entrez_id=687 | ||
|gc_percent=0.721393 | |gc_percent=0.721393 | ||
|gene_alias=BTEB | |gene_alias=BTEB|BTEB1 | ||
|gene_description=Kruppel like factor 9 | |gene_description=Kruppel like factor 9 | ||
|gene_name=KLF9 | |gene_name=KLF9 | ||
Line 17: | Line 18: | ||
|nearest_refseq=NM_001206 | |nearest_refseq=NM_001206 | ||
|nearest_unigene=Hs.150557 | |nearest_unigene=Hs.150557 | ||
|num_trans= | |num_trans=2 | ||
|species=human | |species=human | ||
|start=70419136 | |start=70419136 | ||
|start_of_center_position=70419139 | |start_of_center_position=70419139 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box=-32(CTTTTTAAAAGG,+,0.00),-32(CTTTTTAAAAGG,-,0.00),-31(TTTTTAAAAGGG,+,0.00) | ||
|transcript_name= | |transcript_name=LF345225 MA580802 | ||
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_100858.1 | |tss_id=hg_100858.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} |
Revision as of 15:29, 15 June 2021
Basic information about the TSS
|
| |||||||||||||
TSS cluster detected* |
---|
* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
|
|
TATA-Box annotation
Distance to TSS: | -4483 |
---|---|
Nearest PromoterID: | NM_001206 |
Entrez ID: | 687 |
Nearest Unigene: | Hs.150557 |
Nearest Refseq: | NM_001206 |
Nearest Ensembl: | ENSG00000119138 |
Gene Name: | KLF9 |
Gene Alias: | BTEB |
Gene Description: | Kruppel like factor 9 |
Gene Type: | protein-coding |
CpG%: | 0.14 |
GC%: | 0.721393 |
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -32(CTTTTTAAAAGG,+,0.00),-32(CTTTTTAAAAGG,-,0.00),-31(TTTTTAAAAGGG,+,0.00) |