TSS: Hg 100877.1: Difference between revisions
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{{TSSDetail | {{TSSDetail | ||
|RDICC= | |RDICC= | ||
|all_trans=LG006026:-21 LG053722:-21 LG005479:-60 LG053175:-60 LG051675:-92 | |all_trans=LF137964:-21 LF161434:-21 LF162929:-21 LF632716:-21 LF635987:-21 LF953681:-21 LG006026:-21 LG053722:-21 LG240961:-21 LQ053541:-21 LQ070186:-21 LQ104561:-21 LV471046:-21 LY480843:-21 LY495624:-21 LY496131:-21 LY496875:-21 LY498100:-21 LY498909:-21 LY499732:-21 LY500956:-21 LZ238493:-21 MA643687:-21 MA731571:-21 MP065917:-21 MS868789:-21 MS869875:-21 MS880224:-21 MS884062:-21 MS884851:-21 MS994139:-21 MA800740:-21 MA822326:-21 MP129736:-21 MP162659:-21 MB021432:-21 LY616257:-21 MC002604:-21 LY481061:-24 LY495923:-24 LY496556:-24 LY497256:-24 LY498549:-24 LY499457:-24 LY500124:-24 LY501021:-24 LZ239028:-24 MS869088:-24 MS869940:-24 MS880772:-24 MS884443:-24 MS885243:-24 MS994564:-24 MA822976:-24 LY616792:-24 MB407570:-60 LF137417:-60 LF161872:-60 LF162382:-60 LF404255:-60 LF632741:-60 LF635986:-60 LF857575:-60 LF953134:-60 LG005479:-60 LG053175:-60 LG240414:-60 LP726714:-60 LP818984:-60 LP938926:-60 LQ053540:-60 LQ070187:-60 LQ104559:-60 LQ420462:-60 LQ500610:-60 LQ724885:-60 LQ955693:-60 LV470499:-60 LX154663:-60 LX270587:-60 LY405085:-60 LZ233786:-60 MA260324:-60 MA353786:-60 MA405548:-60 MA643688:-60 MA730734:-60 MA731572:-60 MP045426:-60 MP065887:-60 MP084096:-60 MS646865:-60 MS673609:-60 MS816824:-60 MS833505:-60 MS834442:-60 MS901720:-60 MS904108:-60 MA800741:-60 MP129189:-60 MP162112:-60 MB018409:-60 MP280607:-60 MP283520:-60 MB406737:-60 MB453642:-60 MP355870:-60 LF714877:-65 LF856811:-65 LF404367:-92 LF714690:-92 LF856624:-92 LG051675:-92 LY480965:-92 LY495772:-92 LY496345:-92 LY497070:-92 LY498325:-92 LY499179:-92 LY499931:-92 LY500988:-92 LZ238752:-92 MA353898:-92 MP045538:-92 MP065916:-92 MP084208:-92 MS868937:-92 MS869907:-92 MS880494:-92 MS884257:-92 MS885050:-92 MS994353:-92 MA822663:-92 MP174432:-92 LY616516:-92 MB407132:-92 MC002620:-92 LQ104558:-92 | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| Line 10: | Line 10: | ||
|entrez_id=406987 | |entrez_id=406987 | ||
|gc_percent=0.442786 | |gc_percent=0.442786 | ||
|gene_alias=MIRN204 | |gene_alias=MIRN204|RDICC|miRNA204|mir-204 | ||
|gene_description=microRNA 204 | |gene_description=microRNA 204 | ||
|gene_name=MIR204 | |gene_name=MIR204 | ||
| Line 20: | Line 20: | ||
|nearest_refseq=NR_029621 | |nearest_refseq=NR_029621 | ||
|nearest_unigene= | |nearest_unigene= | ||
|num_trans= | |num_trans=138 | ||
|species=human | |species=human | ||
|start=70809988 | |start=70809988 | ||
|start_of_center_position=70809990 | |start_of_center_position=70809990 | ||
|strand=- | |strand=- | ||
|transcript_name=LG006026 LG053722 | |transcript_name=LF137964 LF161434 LF162929 LF632716 LF635987 LF953681 LG006026 LG053722 LG240961 LQ053541 LQ070186 LQ104561 LV471046 LY480843 LY495624 LY496131 LY496875 LY498100 LY498909 LY499732 LY500956 LZ238493 MA643687 MA731571 MP065917 MS868789 MS869875 MS880224 MS884062 MS884851 MS994139 MA800740 MA822326 MP129736 MP162659 MB021432 LY616257 MC002604 | ||
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_100877.1 | |tss_id=hg_100877.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Revision as of 15:30, 15 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 94 |
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| Nearest PromoterID: | NR_029621 |
| Entrez ID: | 406987 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_029621 |
| Nearest Ensembl: | ENSG00000207935 |
| Gene Name: | MIR204 |
| Gene Alias: | MIRN204 |
| Gene Description: | microRNA 204 |
| Gene Type: | ncRNA |
| CpG%: | 0.01 |
| GC%: | 0.442786 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |