TSS: Hg 100929.1: Difference between revisions
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|all_trans=LF345169:387 MA580746:387 | |||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
|distance= | |distance=387 | ||
|distance_to_tss= | |distance_to_tss=783 | ||
|end=71767737 | |end=71767737 | ||
|end_of_center_position=71767731 | |end_of_center_position=71767731 | ||
|entrez_id=23670 | |entrez_id=23670 | ||
|gc_percent=0.542289 | |gc_percent=0.542289 | ||
|gene_alias= | |gene_alias=TMEM2 | ||
|gene_description= | |gene_description=cell migration inducing hyaluronidase 2 | ||
|gene_name= | |gene_name=CEMIP2 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000135048 | |nearest_ensembl=ENSG00000135048 | ||
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|nearest_refseq=NM_013390 | |nearest_refseq=NM_013390 | ||
|nearest_unigene=Hs.494146 | |nearest_unigene=Hs.494146 | ||
|num_trans= | |num_trans=2 | ||
|species=human | |species=human | ||
|start=71767723 | |start=71767723 | ||
|start_of_center_position=71767730 | |start_of_center_position=71767730 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box=-56(GGCTTTAAAATC,-,0.00),-55(GCTTTAAAATCG,+,0.00) | ||
|transcript_name= | |transcript_name=LF345169 MA580746 | ||
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_100929.1 | |tss_id=hg_100929.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 15:31, 15 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 783 |
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| Nearest PromoterID: | NM_001135820 |
| Entrez ID: | 23670 |
| Nearest Unigene: | Hs.494146 |
| Nearest Refseq: | NM_013390 |
| Nearest Ensembl: | ENSG00000135048 |
| Gene Name: | CEMIP2 |
| Gene Alias: | TMEM2 |
| Gene Description: | cell migration inducing hyaluronidase 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.542289 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -56(GGCTTTAAAATC,-,0.00),-55(GCTTTAAAATCG,+,0.00) |