TSS: Hg 103053.1: Difference between revisions
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|U6ATAC= | |U6ATAC= | ||
|all_trans=ENST00000408749.1:4 NR_023344 | |all_trans=ENST00000408749.1:4 NR_023344:4 U62823:4 | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.05 | |cpg_percent=0.05 | ||
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|entrez_id=100151684 | |entrez_id=100151684 | ||
|gc_percent=0.502488 | |gc_percent=0.502488 | ||
|gene_alias=RNU6ATAC1 | |gene_alias=RNU6ATAC1{{!}}U6ATAC | ||
|gene_description= | |gene_description=RNA, U6atac small nuclear (U12-dependent splicing) | ||
|gene_id=100151684 | |gene_id=100151684 | ||
|gene_name= | |gene_name=RNA, U6atac small nuclear (U12-dependent splicing) | ||
|gene_source=HGNC:34017 | |gene_source=HGNC:34017 | ||
|gene_symbol=RNU6ATAC | |gene_symbol=RNU6ATAC | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NR_023344 | |nearest_refseq=NR_023344 | ||
|nearest_unigene=Hs.545589 | |nearest_unigene=Hs.545589 | ||
|num_trans= | |num_trans=3 | ||
|species=human | |species=human | ||
|start=134164567 | |start=134164567 | ||
|start_of_center_position=134164568 | |start_of_center_position=134164568 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box=-26(CCTTAAATAAAG,+,0.00) | ||
|transcript_name=ENST00000408749.1 NR_023344 | |transcript_name=ENST00000408749.1 NR_023344 U62823 | ||
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_103053.1 | |tss_id=hg_103053.1 | ||
Revision as of 17:18, 15 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -5 |
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| Nearest PromoterID: | NR_023344 |
| Entrez ID: | 100151684 |
| Nearest Unigene: | Hs.545589 |
| Nearest Refseq: | NR_023344 |
| Nearest Ensembl: | ENSG00000221676 |
| Gene Name: | RNA, U6atac small nuclear (U12-dependent splicing) |
| Gene Alias: | RNU6ATAC1|U6ATAC |
| Gene Description: | RNA, U6atac small nuclear (U12-dependent splicing) |
| Gene Type: | snRNA |
| CpG%: | 0.05 |
| GC%: | 0.502488 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -26(CCTTAAATAAAG,+,0.00) |
TSS expression
Expression data not found.