TSS: Hg 121987.1: Difference between revisions
From referenceTSS
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|MMP-8= | |MMP-8= | ||
|PMNL-CL= | |PMNL-CL= | ||
|all_trans=ENST00000236826. | |all_trans=ENST00000236826.8:0 ENST00000531168.1:0 ENST00000532799.1:0 NM_001304442:0 NM_001304441:0 NM_002424:0 AK292659:0 AK303388:0 AK303511:0 AK313374:0 ENST00000533258.5:10 J05556:24 BC144094:35 BC074988:58 BC074989:58 KJ904503:95 ENST00000438475.2:170 | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
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|entrez_id=4317 | |entrez_id=4317 | ||
|gc_percent=0.467662 | |gc_percent=0.467662 | ||
|gene_alias=CLG1 | |gene_alias=CLG1{{!}}HNC{{!}}MMP-8{{!}}PMNL-CL | ||
|gene_description=matrix metallopeptidase 8 | |gene_description=matrix metallopeptidase 8 | ||
|gene_id=4317 | |gene_id=4317 | ||
| Line 22: | Line 22: | ||
|hgnc_mgi_id=HGNC:7175 | |hgnc_mgi_id=HGNC:7175 | ||
|nearest_ensembl=ENSG00000118113 | |nearest_ensembl=ENSG00000118113 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_002424 | ||
|nearest_refseq=NM_002424 | |nearest_refseq=NM_002424 | ||
|nearest_unigene=Hs.161839 | |nearest_unigene=Hs.161839 | ||
|num_trans= | |num_trans=17 | ||
|species=human | |species=human | ||
|start=102724950 | |start=102724950 | ||
|start_of_center_position=102724953 | |start_of_center_position=102724953 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box=-33(GGCTTTAAAGAG,-,0.00) | ||
|transcript_name=ENST00000236826. | |transcript_name=ENST00000236826.8 ENST00000531168.1 ENST00000532799.1 NM_001304442 NM_001304441 NM_002424 AK292659 AK303388 AK303511 AK313374 | ||
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_121987.1 | |tss_id=hg_121987.1 | ||
Revision as of 00:38, 16 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 0 |
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| Nearest PromoterID: | NM_002424 |
| Entrez ID: | 4317 |
| Nearest Unigene: | Hs.161839 |
| Nearest Refseq: | NM_002424 |
| Nearest Ensembl: | ENSG00000118113 |
| Gene Name: | matrix metallopeptidase 8 |
| Gene Alias: | CLG1|HNC|MMP-8|PMNL-CL |
| Gene Description: | matrix metallopeptidase 8 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.467662 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -33(GGCTTTAAAGAG,-,0.00) |
TSS expression
Expression data not found.