TSS: Hg 164699.1: Difference between revisions
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{{TSSDetail | {{TSSDetail | ||
|all_trans=ENST00000455584 | |all_trans=ENST00000455584.2:75 AB209899:75 AK314557:82 AK002035:96 AF096870:-98 HQ257965:119 KJ898262:119 EU446937:119 CR457136:119 BC001564:232 | ||
|chr=chr17 | |chr=chr17 | ||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
|distance=75 | |distance=75 | ||
|distance_to_tss= | |distance_to_tss=31218 | ||
|end=15651738 | |end=15651738 | ||
|end_of_center_position=15651733 | |end_of_center_position=15651733 | ||
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|gene_alias=EBBP | |gene_alias=EBBP | ||
|gene_description=tripartite motif containing 16 | |gene_description=tripartite motif containing 16 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name=TRIM16 | ||
|gene_source=HGNC:14379 | |gene_source=HGNC:14379 | ||
|gene_symbol=CDRT1 | |gene_symbol=CDRT1 | ||
|gene_synonyms=FBXW10B HREP SM25H2 | |gene_synonyms=FBXW10B HREP SM25H2 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl=ENSG00000221926 | |nearest_ensembl=ENSG00000221926 | ||
|nearest_promoter_id=NM_006470 | |nearest_promoter_id=NM_006470 | ||
|nearest_refseq=NM_006470 | |nearest_refseq=NM_006470 | ||
|nearest_unigene=Hs.123534 | |nearest_unigene=Hs.123534 | ||
|num_trans= | |num_trans=10 | ||
|species=human | |species=human | ||
|start=15651727 | |start=15651727 | ||
|start_of_center_position=15651732 | |start_of_center_position=15651732 | ||
|strand=- | |strand=- | ||
|transcript_name=ENST00000455584 | |transcript_name=ENST00000455584.2 AB209899 | ||
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_164699.1 | |tss_id=hg_164699.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=H0Y626 | |uniprot_id=H0Y626 Q59EB2 | ||
}} | }} | ||
Revision as of 17:07, 16 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 31218 |
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| Nearest PromoterID: | NM_006470 |
| Entrez ID: | 10626 |
| Nearest Unigene: | Hs.123534 |
| Nearest Refseq: | NM_006470 |
| Nearest Ensembl: | ENSG00000221926 |
| Gene Name: | TRIM16 |
| Gene Alias: | EBBP |
| Gene Description: | tripartite motif containing 16 |
| Gene Type: | protein-coding |
| CpG%: | 0.025 |
| GC%: | 0.547264 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
TSS expression
Expression data not found.