TSS: Hg 167865.1: Difference between revisions
From referenceTSS
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|SLNCR= | |SLNCR= | ||
|SLNCR1= | |SLNCR1= | ||
|all_trans=ENST00000453722.6:0 | |all_trans=ENST00000648631.1:0 ENST00000649614.1:0 ENST00000453722.6:0 ENST00000648623.2:0 ENST00000649350.1:0 ENST00000648054.1:0 NR_137281:0 NR_137280:0 NR_036488:0 NR_152516:0 NR_152515:0 AK000477:0 KR778895:0 KR778896:0 KR778900:0 AK129763:0 ENST00000650131.2:-17 ENST00000649793.2:-40 ENST00000650419.1:106 ENST00000581801.6:106 ENST00000650476.1:106 ENST00000648088.1:106 ENST00000650227.1:106 ENST00000649250.1:106 ENST00000647953.1:106 ENST00000649343.1:106 ENST00000650423.1:106 ENST00000650570.1:106 ENST00000650161.1:106 ENST00000648954.1:106 ENST00000649936.1:106 ENST00000649407.1:106 ENST00000648428.1:125 ENST00000648248.1:362 ENST00000650482.1:430 LQ718466:484 | ||
|chr=chr17 | |chr=chr17 | ||
|cpg_percent=0.135 | |cpg_percent=0.135 | ||
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|entrez_id=100499467 | |entrez_id=100499467 | ||
|gc_percent=0.731343 | |gc_percent=0.731343 | ||
|gene_alias=HI-LNC75 | |gene_alias=ERRLR01{{!}}HI-LNC75{{!}}HILNC75{{!}}LUCAIR1{{!}}SLNCR{{!}}SLNCR1 | ||
|gene_description=long intergenic non-protein coding RNA 673 | |gene_description=long intergenic non-protein coding RNA 673 | ||
|gene_id=100499467 400619 | |gene_id=100499467 400619 | ||
| Line 19: | Line 19: | ||
|gene_source=HGNC:43564 HGNC:44354 | |gene_source=HGNC:43564 HGNC:44354 | ||
|gene_symbol=LINC00511 LINC00673 | |gene_symbol=LINC00511 LINC00673 | ||
|gene_synonyms=HI-LNC75 onco-lncRNA-12 | |gene_synonyms=ERRLR01 HI-LNC75 SLNCR1 onco-lncRNA-12 | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
|hgnc_mgi_id=HGNC:43564 HGNC:44354 | |hgnc_mgi_id=HGNC:43564 HGNC:44354 | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000227036 | ||
|nearest_promoter_id= | |nearest_promoter_id=NR_152515 | ||
|nearest_refseq=NR_036488 | |nearest_refseq=NR_036488 | ||
|nearest_unigene=Hs.157726 | |nearest_unigene=Hs.157726 | ||
|num_trans= | |num_trans=36 | ||
|species=human | |species=human | ||
|start=72592797 | |start=72592797 | ||
|start_of_center_position=72592804 | |start_of_center_position=72592804 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box=-33(TGGTATATAAGG,-,0.00) | ||
|transcript_name=ENST00000453722.6 | |transcript_name=ENST00000648631.1 ENST00000649614.1 ENST00000453722.6 ENST00000648623.2 ENST00000649350.1 ENST00000648054.1 NR_137281 NR_137280 NR_036488 NR_152516 NR_152515 AK000477 KR778895 KR778896 KR778900 AK129763 | ||
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_167865.1 | |tss_id=hg_167865.1 | ||
Revision as of 18:20, 16 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -1 |
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| Nearest PromoterID: | NR_152515 |
| Entrez ID: | 100499467 |
| Nearest Unigene: | Hs.157726 |
| Nearest Refseq: | NR_036488 |
| Nearest Ensembl: | ENSG00000227036 |
| Gene Name: | long intergenic non-protein coding RNA 511; long intergenic non-protein coding RNA 673 |
| Gene Alias: | ERRLR01|HI-LNC75|HILNC75|LUCAIR1|SLNCR|SLNCR1 |
| Gene Description: | long intergenic non-protein coding RNA 673 |
| Gene Type: | ncRNA |
| CpG%: | 0.135 |
| GC%: | 0.731343 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -33(TGGTATATAAGG,-,0.00) |
TSS expression
Expression data not found.