TSS: Hg 171540.1: Difference between revisions
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|all_trans=MG828556:-18 MG828553:-31 MG828552:-40 MG828554:-40 MG828555:-40 | |||
|chr=chr18 | |chr=chr18 | ||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
|distance= | |distance=-18 | ||
|distance_to_tss=-122931 | |distance_to_tss=-122931 | ||
|end=30175984 | |end=30175984 | ||
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|entrez_id=100302131 | |entrez_id=100302131 | ||
|gc_percent=0.527363 | |gc_percent=0.527363 | ||
|gene_alias=MIRN302F | |gene_alias=MIRN302F{{!}}hsa-mir-302f | ||
|gene_description=microRNA 302f | |gene_description=microRNA 302f | ||
|gene_name=MIR302F | |gene_name=MIR302F | ||
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|nearest_refseq=NR_031684 | |nearest_refseq=NR_031684 | ||
|nearest_unigene= | |nearest_unigene= | ||
|num_trans= | |num_trans=5 | ||
|species=human | |species=human | ||
|start=30175974 | |start=30175974 | ||
|start_of_center_position=30175979 | |start_of_center_position=30175979 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box=-100(CTCTTTAAAAGA,-,0.00),-99(TCTTTAAAAGAT,+,0.00),68(GCCTATAAAAAT,-,0.00) | ||
|transcript_name= | |transcript_name=MG828556 | ||
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_171540.1 | |tss_id=hg_171540.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 19:44, 16 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -122931 |
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| Nearest PromoterID: | NR_031684 |
| Entrez ID: | 100302131 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_031684 |
| Nearest Ensembl: | ENSG00000283218 |
| Gene Name: | MIR302F |
| Gene Alias: | MIRN302F|hsa-mir-302f |
| Gene Description: | microRNA 302f |
| Gene Type: | ncRNA |
| CpG%: | 0.025 |
| GC%: | 0.527363 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -100(CTCTTTAAAAGA,-,0.00),-99(TCTTTAAAAGAT,+,0.00),68(GCCTATAAAAAT,-,0.00) |