TSS: Hg 236423.1: Difference between revisions

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|GPR177=
|GPR177=
|MRP=
|MRP=
|all_trans=ENST00000571722.3:0 NR_003271:0 NR_003924:0
|chr=chr1
|chr=chr1
|cpg_percent=0.07
|cpg_percent=0.07
|distance=
|distance=0
|distance_to_tss=140
|distance_to_tss=117
|end=68232412
|end=68232412
|end_of_center_position=19064130
|end_of_center_position=19064130
|entrez_id=79971
|entrez_id=79971
|gc_percent=0.606965
|gc_percent=0.606965
|gene_alias=C1orf139
|gene_alias=C1orf139{{!}}EVI{{!}}GPR177{{!}}MRP{{!}}mig-14
|gene_description=wntless Wnt ligand secretion mediator
|gene_description=Wnt ligand secretion mediator
|gene_name=WLS
|gene_id=780852
|gene_name=small nucleolar RNA, C/D box 3B-2
|gene_source=HGNC:33190
|gene_symbol=SNORD3B-2
|gene_synonyms=U3-2B U3b2
|gene_type=protein-coding
|gene_type=protein-coding
|hgnc_mgi_id=HGNC:33190
|mig-14=
|mig-14=
|nearest_ensembl=ENSG00000116729
|nearest_ensembl=ENSG00000116729
|nearest_promoter_id=NM_001002292
|nearest_promoter_id=NM_024911
|nearest_refseq=NM_024911
|nearest_refseq=NM_024911
|nearest_unigene=Hs.647659
|nearest_unigene=Hs.647659
|num_trans=0
|num_trans=3
|species=human
|species=human
|start=68232400
|start=68232400
|start_of_center_position=19064129
|start_of_center_position=19064129
|strand=+
|strand=+
|transcript_name=
|transcript_name=ENST00000571722.3 NR_003271 NR_003924
|tss_classification=yes
|tss_classification=yes
|tss_id=hg_236423.1
|tss_id=hg_236423.1
|tss_score=1
|tss_score=1
|uniprot_id=
}}
}}

Revision as of 13:56, 17 June 2021

Basic information about the TSS


TSS ID:hg_236423.1
Species:human
Chr:chr1
Start:68232400
End:68232412
Strand:+
TSS cluster detected*

  * The number of TSS cluster called studies (maximum 16)



Gene and protein annotation


Transcript_name:ENST00000571722.3 NR_003271 NR_003924
Distance:0
GeneID:780852
HGNC/MGI_ID:HGNC:33190
UniProt_ID:
Gene_name:small nucleolar RNA, C/D box 3B-2
Gene_symbol:SNORD3B-2
Gene_synonyms:U3-2B U3b2
Gene_source:HGNC:33190



TATA-Box annotation


Distance to TSS:117
Nearest PromoterID:NM_024911
Entrez ID:79971
Nearest Unigene:Hs.647659
Nearest Refseq:NM_024911
Nearest Ensembl:ENSG00000116729
Gene Name:small nucleolar RNA, C/D box 3B-2
Gene Alias:C1orf139|EVI|GPR177|MRP|mig-14
Gene Description:Wnt ligand secretion mediator
Gene Type:protein-coding
CpG%:0.07
GC%:0.606965
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):



TSS expression

Expression data not found.